debian/changelog

+phybin (0.3-3) unstable; urgency=medium
+
+  * Add hint to Github in watch file
+  * Add patch to build with ghc-8.6 (Thanks to Joachim Breitner
+    <nomeata@debian.org>)
+    Closes: #916800
+  * Standards-Version: 4.2.1
+  * Secure URI in copyright format
+
+ -- Andreas Tille <tille@debian.org>  Wed, 19 Dec 2018 21:52:54 +0100
+
 phybin (0.3-2) unstable; urgency=medium
 
   * debhelper 10

debian/control

@@ -20,7 +20,7 @@ Build-Depends: debhelper (>= 10),
                libghc-test-framework-dev,
                libghc-test-framework-hunit-dev,
                libghc-test-framework-th-dev
-Standards-Version: 4.1.4
+Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/phybin
 Vcs-Git: https://salsa.debian.org/med-team/phybin.git
 Homepage: http://www.cs.indiana.edu/~rrnewton/projects/phybin/

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: phybin
 Upstream-Contact: Ryan Newton <rrnewton@gmail.com>
 Source: https://github.com/rrnewton/PhyBin

debian/patches/ghc-8.6.patch

+From: Joachim Breitner <mail@joachim-breitner.de>
+Date: Wed, 19 Dec 2018 18:08:37 +0100
+Description: Hide Prelude.<>, to make the code GHC-8.6 compatible
+Origin: https://patch-diff.githubusercontent.com/raw/rrnewton/PhyBin/pull/13.patch
+Bug-Debian: https://bugs.debian.org/916800
+
+---
+ /Bio/Phylogeny/PhyBin.hs           | 1 +
+ /Bio/Phylogeny/PhyBin/CoreTypes.hs | 1 +
+ 2 files changed, 2 insertions(+)
+
+--- a/Bio/Phylogeny/PhyBin.hs
++++ b/Bio/Phylogeny/PhyBin.hs
+@@ -30,6 +30,7 @@ import qualified Control.Concurrent.Asyn
+ import           Control.Exception   (evaluate)
+ import           Control.Applicative ((<$>),(<*>))
+ import           Control.Concurrent  (Chan)
++import           Prelude hiding ((<>))
+ import           System.FilePath     (combine)
+ import           System.Directory    (doesFileExist, doesDirectoryExist, createDirectoryIfMissing,
+                                       getDirectoryContents, getCurrentDirectory)
+--- a/Bio/Phylogeny/PhyBin/CoreTypes.hs
++++ b/Bio/Phylogeny/PhyBin/CoreTypes.hs
+@@ -32,6 +32,7 @@ module Bio.Phylogeny.PhyBin.CoreTypes
+        )
+        where
+ 
++import Prelude hiding ((<>))
+ import qualified Data.Map as M
+ import qualified Data.Set as S
+ import Data.Foldable (Foldable(..))

debian/patches/series

 unconstraint-text-dependency.patch
 unsafeIOToST.patch
+ghc-8.6.patch

debian/watch

-version=3
+version=4
 http://hackage.haskell.org/package/phybin/distro-monitor .*-([0-9\.]+)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))
+
+# also check https://github.com/rrnewton/PhyBin/releases