debian/changelog

-phylip (1:3.696+dfsg-6) UNRELEASED; urgency=medium
+phylip (1:3.697+dfsg-1) unstable; urgency=medium
 
   * Fix watch file
 
   [ Steffen Moeller ]
   * d/upstream/metadata: Added references to registries.
 
- -- Andreas Tille <tille@debian.org>  Mon, 19 Jun 2017 15:38:11 +0200
+  [ Andreas Tille ]
+  * New upstream version
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+  * Secure URI in copyright format
+  * Drop useless get-orig-source target
+  * Remove trailing whitespace in debian/changelog
+  * Remove trailing whitespace in debian/control
+  * Do not parse d/changelog
+
+ -- Andreas Tille <tille@debian.org>  Mon, 29 Oct 2018 11:44:41 +0100
 
 phylip (1:3.696+dfsg-5) unstable; urgency=medium
 

debian/compat

-10
+11

debian/control

@@ -4,7 +4,7 @@ Uploaders: Andreas Tille <tille@debian.org>,
            Manuel Prinz <manuel@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
                dh-exec,
                libx11-dev,
                libxt-dev,
@@ -13,9 +13,9 @@ Build-Depends: debhelper (>= 10),
                default-jdk,
                libjna-java,
                javahelper
-Standards-Version: 3.9.8
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/phylip.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/phylip.git
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/phylip
+Vcs-Git: https://salsa.debian.org/med-team/phylip.git
 Homepage: http://evolution.genetics.washington.edu/phylip.html
 
 Package: phylip

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: PHYLIP
 Upstream-Contact: Joe Felsenstein <joe@gs.washington.edu>
 Source: http://evolution.gs.washington.edu/phylip/download/

debian/rules

@@ -4,9 +4,10 @@
 
 export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 
-DEBPKGNAME		:= $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+include /usr/share/dpkg/default.mk
+
 DEB_HOST_MULTIARCH	?= $(shell dpkg-architecture -qDEB_HOST_MULTIARCH)
-LIBDIR			:= $(CURDIR)/debian/$(DEBPKGNAME)/usr/lib/ # $(DEB_HOST_MULTIARCH)
+LIBDIR			:= $(CURDIR)/debian/$(DEB_SOURCE)/usr/lib/ # $(DEB_HOST_MULTIARCH)
 
 export JAVA_HOME=/usr/lib/jvm/default-java
 
@@ -35,5 +36,3 @@ override_dh_auto_clean:
 	    rm -rf dist build.xml ; \
 	fi
 
-get-orig-source:
-	uscan --verbose --force-download --repack --compress xz

doc/main.html

@@ -16,9 +16,9 @@
 <P>
 <IMG SRC="phylip.gif" ALT="PHYLIP Logo">
 <P>
-<H3>Version 3.696</H3>
+<H3>Version 3.697</H3>
 <P>
-<H3>September, 2014</H3>
+<H3>December, 2017</H3>
 <P>
 <H2>by Joseph Felsenstein</H2>
 <P>

src/cons.c

@@ -941,8 +941,8 @@ void rehash()
     memcpy(s, grouping[old_index], setsz * sizeof(group_type));
     ss = 0.0;
     for (j = 0; j < setsz; j++)
-      ss += s[j] /* pow(2, SETBITS*j)*/;
-    temp = ss * smult;
+      ss += s[j] * smult; /* pow(2, SETBITS*j)*/;
+    temp = ss;
     new_index = (long)(new_maxgrp * (temp - floor(temp)));
     done = false;
     while (!done) {

src/phylip.h

 #ifndef _PHYLIP_H_
 #define _PHYLIP_H_
 
-/* version 3.696.
+/* version 3.697.
    Written by Joseph Felsenstein, Akiko Fuseki, Sean Lamont, Andrew Keeffe,
    Mike Palczewski, Doug Buxton and Dan Fineman.
 
-   Copyright (c) 1980-2014, Joseph Felsenstein
+   Copyright (c) 1980-2017, Joseph Felsenstein
    All rights reserved.
 
    Redistribution and use in source and binary forms, with or without
@@ -31,7 +31,7 @@
    POSSIBILITY OF SUCH DAMAGE.
 */
 
-#define VERSION "3.696"
+#define VERSION "3.697"
 
 /* Debugging options */
 /* Define this to disable assertions */