Commit e666094d authored by Andreas Tille's avatar Andreas Tille
Browse files

Fix packaging - thanks again to Markus Koschany

parent de555474

debian/control

+3 −2
Original line number Diff line number Diff line
@@ -7,7 +7,7 @@ Build-Depends: debhelper (>= 11~), 
               javahelper,

               scala,

               libhtsjdk-java

Standards-Version: 4.1.4

Standards-Version: 4.2.0

Vcs-Browser: https://salsa.debian.org/med-team/pilon

Vcs-Git: https://salsa.debian.org/med-team/pilon.git

Homepage: https://github.com/broadinstitute/pilon/wiki
@@ -15,7 +15,8 @@ Homepage: https://github.com/broadinstitute/pilon/wiki 
Package: pilon

Architecture: all

Depends: ${misc:Depends},

         libhtsjdk-java

         libhtsjdk-java,

         libcommons-lang-java

Conflicts: pilon-non-free

Replaces: pilon-non-free

Description: automated genome assembly improvement and variant detection tool

debian/manifest

+1 −1
Original line number Diff line number Diff line 
usr/share/java/pilon.jar:

    Main-Class: org.broadinstitute.pilon.Pilon

    Manifest-Version: 1.0

    Class-Path: /usr/share/java/htsjdk.jar
 
    Class-Path: /usr/share/java/htsjdk.jar /usr/share/java/scala-library.jar /usr/share/java/commons-lang.jar

debian/rules

+3 −0
Original line number Diff line number Diff line
@@ -8,3 +8,6 @@ export LC_ALL=C.UTF-8 


override_dh_auto_build:

	scalac -classpath /usr/share/java/htsjdk.jar -d pilon.jar src/main/scala/org/broadinstitute/pilon/*



override_jh_depends:

	# do nothing here