Commit a2dadc66 authored by Dylan Aïssi's avatar Dylan Aïssi
Browse files

New upstream version 1.90~b6.9-190304

parent 868d9efd

plink.c

+227 −227

File changed.

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plink_assoc.c

+4 −4
Original line number Diff line number Diff line 
// This file is part of PLINK 1.90, copyright (C) 2005-2018 Shaun Purcell,

// This file is part of PLINK 1.90, copyright (C) 2005-2019 Shaun Purcell,

// Christopher Chang.

//

// This program is free software: you can redistribute it and/or modify
@@ -2195,19 +2195,19 @@ static uint32_t g_precomp_start[MODEL_BLOCKSIZE]; 
//   n := (g_precomp_width * marker_bidx) + missing_ct -

//        g_precomp_start[marker_bidx].

//

// For --assoc perm/--model [dom/rec/trend] perm:

// For --assoc perm/--model {dom|rec|trend} perm:

//   g_precomp_ui[4n] and [4n + 1] define the interval with less extreme

//     p-values than the original.  [4n + 2] and [4n + 3] define the

//     interval with less or equally extreme p-values.

//

// For --assoc mperm fisher/--model [dom/rec] fisher:

// For --assoc mperm fisher/--model {dom|rec} fisher:

//   g_precomp_ui[6n]...[6n + 3] is as in --assoc perm.

//   g_precomp_ui[6n + 4] and [6n + 5] are the floor and offset for the

//     range of case_set_cts where Fisher p-value calculation is unnecessary.

//   g_precomp_d[2n] and [2n + 1] are tot_prob and right_prob for

//     fisher22_tail_pval().  (This is almost irrelevant.)

//

// For --assoc mperm/--model [dom/rec/trend] mperm:

// For --assoc mperm/--model {dom|rec|trend} mperm:

//   g_precomp_ui is as in --assoc mperm fisher.

//   g_precomp_d[2n] and [2n + 1] are expm11 and recip_sum from

//     chi22_get_coeffs()/ca_trend_get_coeffs().

plink_assoc.h

+1 −1
Original line number Diff line number Diff line 
#ifndef __PLINK_ASSOC_H__

#define __PLINK_ASSOC_H__



// This file is part of PLINK 1.90, copyright (C) 2005-2018 Shaun Purcell,

// This file is part of PLINK 1.90, copyright (C) 2005-2019 Shaun Purcell,

// Christopher Chang.

//

// This program is free software: you can redistribute it and/or modify

plink_calc.c

+1 −1
Original line number Diff line number Diff line 
// This file is part of PLINK 1.90, copyright (C) 2005-2018 Shaun Purcell,

// This file is part of PLINK 1.90, copyright (C) 2005-2019 Shaun Purcell,

// Christopher Chang.

//

// This program is free software: you can redistribute it and/or modify

plink_cluster.c

+1 −1
Original line number Diff line number Diff line 
// This file is part of PLINK 1.90, copyright (C) 2005-2018 Shaun Purcell,

// This file is part of PLINK 1.90, copyright (C) 2005-2019 Shaun Purcell,

// Christopher Chang.

//

// This program is free software: you can redistribute it and/or modify