debian/changelog

+prime-phylo (1.0.11-7) unstable; urgency=medium
+
+  [ Giovanni Mascellani ]
+  * Fix build with Boost 1.67
+    Closes: #912781
+
+  [ Andreas Tille ]
+  * Standards-Version: 4.2.1
+  * Secure URI in copyright format
+  * Remove trailing whitespace in debian/copyright
+
+ -- Andreas Tille <tille@debian.org>  Sun, 04 Nov 2018 08:29:40 +0100
+
 prime-phylo (1.0.11-6) unstable; urgency=medium
 
   [ Juhani Numminen ]

debian/control

@@ -18,7 +18,7 @@ Build-Depends: debhelper (>= 11~),
                libboost-mpi-dev,
                libboost-serialization-dev,
                zlib1g-dev
-Standards-Version: 4.1.4
+Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/prime-phylo
 Vcs-Git: https://salsa.debian.org/med-team/prime-phylo.git
 Homepage: http://prime.sbc.su.se

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: PrIME
 Upstream-Contact: Erik Sjolund <erik.sjolund@gmail.com>
 Source: http://prime.sbc.su.se/download/

debian/patches/0003-Fix-build-with-Boost-1.67.patch

+From: Giovanni Mascellani <gio@debian.org>
+Date: Sat, 3 Nov 2018 21:50:48 +0100
+Bug-Debian: https://bugs.debian.org/912781
+Subject: Fix build with Boost 1.67.
+
+Explicitly including the header boost/serialization/vector.hpp is
+required for automatic serialization of std::vector.
+---
+ src/cxx/libraries/prime/MpiMCMC.cc     | 2 +-
+ src/cxx/libraries/prime/MpiMultiGSR.cc | 1 +
+ 2 files changed, 2 insertions(+), 1 deletion(-)
+
+--- a/src/cxx/libraries/prime/MpiMCMC.cc
++++ b/src/cxx/libraries/prime/MpiMCMC.cc
+@@ -18,7 +18,7 @@
+ #include <cmath>
+ #include <cassert>
+ 
+-
++#include <boost/serialization/vector.hpp>
+ 
+ 
+ 
+--- a/src/cxx/libraries/prime/MpiMultiGSR.cc
++++ b/src/cxx/libraries/prime/MpiMultiGSR.cc
+@@ -15,6 +15,7 @@
+ #include <sstream>
+ #include <fstream>
+ 
++#include <boost/serialization/vector.hpp>
+ 
+ namespace beep
+ {

debian/patches/series

 # fix-gcc-6.patch
 fix-ftbfs-with-Boost160.patch
 fix-gcc-8.patch
+0003-Fix-build-with-Boost-1.67.patch