debian/changelog

+prime-phylo (1.0.11-8) unstable; urgency=medium
+
+  * Suggests: s/python-biopython/python3-biopython/
+  * debhelper-compat 12
+  * Standards-Version: 4.4.1
+  * Trim trailing whitespace.
+  * Remove obsolete field Contact from debian/upstream/metadata.
+
+ -- Andreas Tille <tille@debian.org>  Wed, 11 Dec 2019 14:49:07 +0100
+
 prime-phylo (1.0.11-7) unstable; urgency=medium
 
   [ Giovanni Mascellani ]

debian/compat

-11

debian/control

@@ -4,7 +4,7 @@ Uploaders: Erik Sjolund <erik.sjolund@gmail.com>,
            Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                gengetopt,
                cmake,
                libblas-dev,
@@ -18,7 +18,7 @@ Build-Depends: debhelper (>= 11~),
                libboost-mpi-dev,
                libboost-serialization-dev,
                zlib1g-dev
-Standards-Version: 4.2.1
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/prime-phylo
 Vcs-Git: https://salsa.debian.org/med-team/prime-phylo.git
 Homepage: http://prime.sbc.su.se
@@ -33,7 +33,7 @@ Suggests: njplot,
           muscle,
           probalign,
           mafft,
-          python-biopython,
+          python3-biopython,
           mrbayes,
           phyml,
           raxml

debian/rules

@@ -24,5 +24,3 @@ override_dh_auto_configure:
 
 override_dh_makeshlibs:
 	dh_makeshlibs -pprime-phylo -Xprime-phylo.so -Xprime-phylo-sfile.so
-
-

debian/upstream/metadata

-Contact: Lars Arvestad <arve@csc.kth.se>
 Reference:
- Author: Åkerborg, Ö. and Sennblad, B. and Arvestad, L. and Lagergren, J.
- Title: >
-  Simultaneous Bayesian gene tree reconstruction and reconciliation analysis
- Journal: Proceedings of the National Academy of Sciences
- Year: 2009
- Volume: 106
- Number: 14
- Pages: 5714-5719
- DOI: 10.1073/pnas.0806251106
- PMID: 19299507
- URL: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2667006/
- eprint: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2667006/pdf/zpq5714.pdf
+  Author: Åkerborg, Ö. and Sennblad, B. and Arvestad, L. and Lagergren, J.
+  Title: >
+    Simultaneous Bayesian gene tree reconstruction and reconciliation analysis
+  Journal: Proceedings of the National Academy of Sciences
+  Year: 2009
+  Volume: 106
+  Number: 14
+  Pages: 5714-5719
+  DOI: 10.1073/pnas.0806251106
+  PMID: 19299507
+  URL: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2667006/
+  eprint: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2667006/pdf/zpq5714.pdf
 Registry:
- - Name: OMICtools
-   Entry: OMICS_29591
- - Name: bio.tools
-   Entry: PrIME
- - Name: SciCrunch
-   Entry: NA
+- Name: OMICtools
+  Entry: OMICS_29591
+- Name: bio.tools
+  Entry: PrIME
+- Name: SciCrunch
+  Entry: NA