debian/changelog

+progressivemauve (1.2.0+4713+dfsg-4) unstable; urgency=medium
+
+  [ Giovanni Mascellani ]
+  * Fix FTBFS with boost1.67
+    Closes: #914049
+
+  [ Andreas Tille ]
+  * Standards-Version: 4.2.1
+
+ -- Andreas Tille <tille@debian.org>  Tue, 04 Dec 2018 10:03:31 +0100
+
 progressivemauve (1.2.0+4713+dfsg-3) unstable; urgency=medium
 
   * Point Vcs fields to salsa.debian.org

debian/control

@@ -12,8 +12,8 @@ Build-Depends: debhelper (>= 11~),
                libboost-iostreams-dev,
                libgenome-dev,
                libmuscle-dev,
-               libmems-dev (>= 1.6.0+4725-7~)
-Standards-Version: 4.1.5
+               libmems-dev
+Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/progressivemauve
 Vcs-Git: https://salsa.debian.org/med-team/progressivemauve.git
 Homepage: http://darlinglab.org/mauve/user-guide/mauvealigner.html

debian/patches/fix_FTBFS_boost1.67.patch

+Author: Giovanni Mascellani <gio@debian.org>
+Bug-Debian: https://bugs.debian.org/914049
+Subject: Fix FTBFS with boost1.67
+
+Make an explicit call to the constructor for NeighborhoodGroup (which is
+an alias for a specialization of boost::tuple), which is not marked
+as "explicit".
+
+--- a/src/repeatoire.cpp
++++ b/src/repeatoire.cpp
+@@ -1591,7 +1591,7 @@ void processNovelSubsetMatches( GappedMa
+ 		getSubsets(M_j,-direction*ni_parity*nj_parity).push_back(nj_link);
+         //getExtraSubsets(M_j,-direction*ni_parity*nj_parity).push_back(nj_link);
+ 		// push M_n onto the heap
+-		novel_subset_list.push_back(M_n);
++		novel_subset_list.push_back(NeighborhoodGroup{M_n});
+ 		//procrastination_queue.push(M_n);
+ 		novel_subset_count++;
+ 	}

debian/patches/series

@@ -3,3 +3,4 @@ do_not_build_static_binaries.patch
 spelling.patch
 use-native-getopt.patch
 adapt-to-unversioned-libs.patch
+fix_FTBFS_boost1.67.patch