Commit 6cdfaa4b authored by Michael R. Crusoe's avatar Michael R. Crusoe 🏳️‍🌈
Browse files

New upstream version 1.13.7+dfsg

parent daf27376

bin/prokka

+6 −6
Original line number Diff line number Diff line
@@ -45,7 +45,7 @@ my @CMDLINE = ($0, @ARGV); 
my $OPSYS = $^O;

my $BINDIR = "$FindBin::RealBin/../binaries/$OPSYS";

my $EXE = $FindBin::RealScript;

my $VERSION = "1.13.3";

my $VERSION = "1.13.7";

my $AUTHOR = 'Torsten Seemann <torsten.seemann@gmail.com>';

my $URL = 'https://github.com/tseemann/prokka';

my $PROKKA_PMID = '24642063';
@@ -86,8 +86,8 @@ my $BIDEC = '(\d+\.\d+)'; # pattern of NN.NN for versions that can be compared 


my %tools = (

  'parallel' => {

    GETVER  => "parallel --version | grep '^GNU parallel 2'",

    REGEXP  => qr/GNU parallel (\d+)/,

    GETVER  => "parallel --version | grep -E 'parallel 2[0-9]{7}\$'",

    REGEXP  => qr/parallel (\d+)/,

    MINVER  => "20130422",

    NEEDED  => 1,

  },
@@ -156,13 +156,13 @@ my %tools = ( 
  'blastp' => {

    GETVER  => "blastp -version",

    REGEXP  => qr/blastp:\s+($BIDEC)/,

    MINVER  => "2.2",

    MINVER  => "2.8",

    NEEDED  => 1,

  },

  'makeblastdb' => {

    GETVER  => "makeblastdb -version",

    REGEXP  => qr/makeblastdb:\s+($BIDEC)/,

    MINVER  => "2.2",

    MINVER  => "2.8",

    NEEDED  => 0,  # only if --proteins used

  },

  'tbl2asn' => {
@@ -1342,7 +1342,7 @@ for my $sid (@seq) { 
    $count{ $f->primary_tag }++;

  }

}

for my $ft (keys %count) {

for my $ft (sort keys %count) {

  printf "%s: %d\n", $ft, $count{$ft};

}