Commit 92dfdd23 authored by Michael R. Crusoe's avatar Michael R. Crusoe 🏳️‍🌈
Browse files

New upstream version 1.14.0+dfsg

parent 6cdfaa4b

README.md

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@@ -22,7 +22,7 @@ brew install brewsci/bio/prokka 
If you use [Conda](https://conda.io/docs/install/quick.html)

you can use the [Bioconda channel](https://bioconda.github.io/):

```

conda install -c conda-forge -c bioconda prokka

conda install -c conda-forge -c bioconda -c defaults prokka

```



### Ubuntu/Debian/Mint

bin/prokka

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@@ -19,8 +19,8 @@ 


use strict;

use warnings;

###BREWCONDA###

use FindBin;

use lib "$FindBin::RealBin/../perl5"; # for bundled Perl modules

use Cwd qw(abs_path);

use File::Copy;

use Time::Piece;
@@ -45,7 +45,7 @@ my @CMDLINE = ($0, @ARGV); 
my $OPSYS = $^O;

my $BINDIR = "$FindBin::RealBin/../binaries/$OPSYS";

my $EXE = $FindBin::RealScript;

my $VERSION = "1.13.7";

my $VERSION = "1.14.0";

my $AUTHOR = 'Torsten Seemann <torsten.seemann@gmail.com>';

my $URL = 'https://github.com/tseemann/prokka';

my $PROKKA_PMID = '24642063';

bin/prokka-abricate_to_fasta_db

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@@ -10,6 +10,7 @@ 
#>Q92AT0 2.4.1.333~~~~~~1,2-beta-oligoglucan phosphorylase~~~COG3459

#MTMLKEIKKADLSAAFYPSGELAWLKLKDIMLNQVIQNPLENRLSQIYVRAHVGDKIEIYPLLSRDAEVGFNENGVEYRGVVGPFRYSVQMHFHTRGWFYDVTVDGD



###BREWCONDA###

use Bio::SeqIO;

use Data::Dumper;

bin/prokka-biocyc_to_fasta_db

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#!/usr/bin/env perl

use strict;

use warnings;

###BREWCONDA###

use Bio::SeqIO;

use Data::Dumper;

use Text::Unidecode qw(unidecode);

bin/prokka-cdd_to_hmm

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use strict;

use warnings;

use Data::Dumper;

###BREWCONDA###

use Bio::SeqIO;

use Bio::AlignIO;

use File::Temp qw(tempdir);