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Commits on Source (3)
......@@ -45,7 +45,7 @@ my @CMDLINE = ($0, @ARGV);
my $OPSYS = $^O;
my $BINDIR = "$FindBin::RealBin/../binaries/$OPSYS";
my $EXE = $FindBin::RealScript;
my $VERSION = "1.13.3";
my $VERSION = "1.13.7";
my $AUTHOR = 'Torsten Seemann <torsten.seemann@gmail.com>';
my $URL = 'https://github.com/tseemann/prokka';
my $PROKKA_PMID = '24642063';
......@@ -86,8 +86,8 @@ my $BIDEC = '(\d+\.\d+)'; # pattern of NN.NN for versions that can be compared
my %tools = (
'parallel' => {
GETVER => "parallel --version | grep '^GNU parallel 2'",
REGEXP => qr/GNU parallel (\d+)/,
GETVER => "parallel --version | grep -E 'parallel 2[0-9]{7}\$'",
REGEXP => qr/parallel (\d+)/,
MINVER => "20130422",
NEEDED => 1,
},
......@@ -156,13 +156,13 @@ my %tools = (
'blastp' => {
GETVER => "blastp -version",
REGEXP => qr/blastp:\s+($BIDEC)/,
MINVER => "2.2",
MINVER => "2.8",
NEEDED => 1,
},
'makeblastdb' => {
GETVER => "makeblastdb -version",
REGEXP => qr/makeblastdb:\s+($BIDEC)/,
MINVER => "2.2",
MINVER => "2.8",
NEEDED => 0, # only if --proteins used
},
'tbl2asn' => {
......@@ -1342,7 +1342,7 @@ for my $sid (@seq) {
$count{ $f->primary_tag }++;
}
}
for my $ft (keys %count) {
for my $ft (sort keys %count) {
printf "%s: %d\n", $ft, $count{$ft};
}
......
prokka (1.13.7+dfsg-1) unstable; urgency=medium
* New upstream release.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 23 Jul 2019 18:59:29 +0200
prokka (1.13.4+dfsg-1.1) unstable; urgency=medium
* Non-maintainer upload.
......
......@@ -17,7 +17,7 @@ Depends: ${misc:Depends},
${perl:Depends},
parallel,
libbio-perl-perl,
ncbi-blast+,
ncbi-blast+ (>= 2.8),
hmmer,
aragorn,
prodigal,
......