README

- PSORTb version 3.0.3 README
+ PSORTb version 3.0.5 README
 -----------------------------------------------------------------------------
     * OVERVIEW
     * DESCRIPTION
@@ -26,6 +26,14 @@ following the installation instructions for the command line version will
 be sufficient - the server package installation instructions are only
 necessary if one wishes to set up their own local PSORTb server.
 
+Two files have been updated in this latest version of the package. The 
+Gram positive and Gram negative bacterial BLAST databases have had 32 extra 
+sequences added, to improve predictions of more diverse species, in keeping
+with the 2016 publication of the PSORTdb paper:  Peabody MA, Laird MR, 
+Vlasschaert C, Lo R, Brinkman FS. (2016) PSORTdb: expanding the bacteria and
+archaea protein subcellular localization database to better reflect
+diversity in cell envelope structures. Nucleic Acids Research. 44(D1):D663-8.
+
 For further information, please contact psort-mail@sfu.ca.
 -----------------------------------------------------------------------------
 DESCRIPTION

debian/changelog

-psortb (3.0.4+dfsg-3) UNRELEASED; urgency=medium
+psortb (3.0.5+dfsg-1) unstable; urgency=medium
+
+  * New upstream version
 
   [ Carnë Draug ]
   * d/control: enable autopkgtest with pkg-perl default tests; add missing
@@ -10,7 +12,12 @@ psortb (3.0.4+dfsg-3) UNRELEASED; urgency=medium
     - yamllint cleanliness
   * d/copyright: removed tailing ":" from upstream name
 
- -- Andreas Tille <tille@debian.org>  Sat, 15 Jul 2017 07:24:19 +0200
+  [ Andreas Tille ]
+  * cme fix dpkg-control
+  * debhelper 11
+  * d/rules: do not parse d/changelog
+
+ -- Andreas Tille <tille@debian.org>  Tue, 20 Feb 2018 18:25:29 +0100
 
 psortb (3.0.4+dfsg-2) unstable; urgency=medium
 

debian/compat

-10
+11

debian/control

@@ -2,22 +2,22 @@ Source: psortb
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille@debian.org>
 Section: science
+Testsuite: autopkgtest-pkg-perl
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
                libsvm-dev,
                bioperl,
                ncbi-blast+-legacy,
-               libsquid-dev (>= 1.9g+cvs20050121-9~),
-               libhmmer2-dev (>= 2.3.2+dfsg-2~),
+               libsquid-dev,
+               libhmmer2-dev,
                libsvmloc-dev,
                libmodhmm-dev,
                pkg-config,
                pftools
-Standards-Version: 3.9.8
+Standards-Version: 4.1.3
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/psortb.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/psortb.git
 Homepage: http://www.psort.org/
-Testsuite: autopkgtest-pkg-perl
 
 Package: psortb
 Architecture: any

debian/rules

@@ -4,7 +4,7 @@
 
 export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 
-DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+include /usr/share/dpkg/default.mk
 
 %:
 	dh $@
@@ -26,4 +26,4 @@ override_dh_auto_build:
 
 override_dh_fixperms:
 	dh_fixperms
-	chmod +x debian/$(DEBPKGNAME)/usr/lib/psort/conf/analysis/signal/archaea/check-sig
+	chmod +x debian/$(DEB_SOURCE)/usr/lib/psort/conf/analysis/signal/archaea/check-sig

psort/conf/analysis/sclblast/gramneg/sclblast

@@ -93023,3 +93023,217 @@ MIKKILIANRGEIAVRIVRACAEMGIRSVAVYSEADRHALHVKRADEAHSIGADPLAGYLNPRALVNLAVESGCDALHPG
 MIAQLPSELLSLQLPLRIRIGDAQAFDLGPDPQVTMVIRDPSLLTEITHPSLDALGKAYVEKRLDIEGPISQVIGIGDALSEALGEPDGGAPPVRESHDKDTDAEAIHYHYDLSNDFYQLWLDPEMVYSCAYFETGKEDLATAQLAKLRHLCRKLRLQPGEKLLDVGCGWGGLARLAAREFGVEVTGITLSKEQLALGRERVKAEGLEDRVTLKLLDYRDLPRDGRFDKVVSVGMFEHVGHANLGLYFQQLYEAVRPGGLVMNHGITSRYTDGRPVGKGAGDFIDRYVFPHGELPHLSLAVARMSEAGLEVVDVESLRLHYARTLDFWSANLEARLKEAARLVPEETLRIWRLYLAGCAYGFKRGWINLHQILAIRPHEDGSHELPWSRRDLYA
 >15596097 [Cytoplasmic] Cytoplasmic protein
 MSDSLQLILEDTDGTQLETSCTRFAVVWQGKEVWVQQAGNGQLLIGVDVEDGDTEYTNLLLRPMATNLVSLQLEMEPIEEGDDHEHGPDCGCDHTH
+>17979023 [Periplasmic] [Cellwall] Alkaline phosphatase
+MPVSTYLRATVVIVAAALLPLTACSSDTTTESSGDTVHRSADGDIVTNGGARRIDGDQTDTERSAINGGK
+ARNVILLVGDGMGDSEITMARNYEKGAGGSFDGLDALPLSGQYTTYALNKDGKPNYVTDSAASATGWTTG
+TKTYNGALGIDIKGNPQKTILELAKAQGFATGDVTTSEIQDATSASLFSHISERDCYGPVQTAADCAADA
+LENGGPGSVTEQLLTTRPDLTLGGGAETFSQTANGGEYKGKTLEAQAKERGFQIVRTASELDAVTAADQD
+NPVIGLFADGNMPVRWSGPPAVRHGYLQPAAKCTDNPERGSEVPRLAAMTQKAIDLLKNGKAGQDKGFYL
+QVEGASIDKKDHDADPCGQIGETVDFDEAVQTALNFAREDGNTLVVVTADHGHSSQIVEALSEDDLRDIA
+EDTKQPVERVRDTMYPGLTRKLVTADDAEMTVSYGTSADVDVESETHTGTQVRVAAFGPRAANVVGLTDQ
+TDLFFTMTDALGLDRGEEPAH
+>57116684 [Extracellular] Proline-rich 28 kDa antigen
+MIQIARTWRVFAGGMATGFIGVVLVTAGKASADPLLPPPPIPAPVSAPATVPPVQNLTALPGGSSNRFSP
+APAPAPIASPIPVGAPGSTAVPPLPPPVTPAISGTLRDHLREKGVKLEAQRPHGFKALDITLPMPPRWTQ
+VPDPNVPDAFVVIADRLGNSVYTSNAQLVVYRLIGDFDPAEAITHGYIDSQKLLAWQTTNASMANFDGFP
+SSIIEGTYRENDMTLNTSRRHVIATSGADKYLVSLSVTTALSQAVTDGPATDAIVNGFQVVAHAAPAQAP
+APAPGSAPVGLPGQAPGYPPAGTLTPVPPR
+>4775294 [Periplasmic] [Cellwall] Porin
+MENVYEFLGNLDVLSGSGLIGYVFDFLGASSKWAGAVADLIGLLG
+>81761135 [Periplasmic] [Cellwall] Anion-specific porin
+MKLSHRIAAMAATAGITVAAFAAPASASDFANLSSTNKELSPQYNWVACGILEGGLKAAGVLEEGQYNRE
+LAEAIAAKGEGFWTTQFPQIGDWNEDQAAALADRAQTCGLVKADTYLSELSSNFSS
+>75446001 [Periplasmic] [Cellwall] PorC protein
+MKKLRFATIAAATVALTASLTPSASAQDFNQIIDNFDCGILQTAIYTTGLAHENSTRSELAANLRNSAAV
+GQLDFPLNIAATGYSERIANRALTCGIVKEDPQDFLSQLQLLSSNLSSSFFTA
+>57160609 [Periplasmic] [Cellwall] Cation-specific porin
+MDLSLLKETLGNYETFGGNIGTALQSIPTLLDSILNFFDNFGDLADTTGENLDNFSS
+>122549390 [Outermembrane,Extracellular] [S-layer] PS2
+MFNNRIRTAALAGAIAISTAASGVAIPAFAQETTVTTNGFNDADGSTAQPVGPVNHTEAELRDATDATGN
+YLEAFQTGDIQAIVGAYVDAGEDGFDPSEQAIFEAFEAARNEATQQLAFSKDTITKTRESVNYALKVDQE
+ATEAFLAYRNALRGAADAINPLIEAANDANRTDRAEIKDYADLYTQTDIALETPQLAYAFQDLKALQAEV
+DADFEWLGEFGIDQEDANYVQRYHIPAVEALKAEVDARVAAIEPLRADSIAKNLEAQKSDVLVRQLFLER
+ATAQRDTLRVVEAIFATAARYVELYESDENVNVEGDTLRNHYVALLPTLFGAAFFNIDILDDADEAAELY
+YLHWNTDLGTNNEDLAYAEEKREFALLTYAKVFINGIWQEEVKYVQNLDDGARAEAARVEAERLADEAYR
+AEQLRIAQEAADAQKAIADALAKEAENGNNSSDDKETGSSDIGSWGPFAAIAAIIAAIAAIFPFLSGIVK
+F
+>6226665 [Periplasmic,OuterMembrane] Outer membrane protein alpha
+MKRVLLTVAMLSVFFSAMFAFFPDVPKDHWAYEYVWKLWQRGIFIGYPDGEFKGDRYITRYEAATAVSRL
+LDFIEQKMLAGASGDLAQVVGNLSDKYMALEEKVNGLTGILDTLASQIGTTQANLTETERELLEKIDAVK
+EEIEMEFDKEISLNREVVNNIGLKLGNLSRDYERYKENVDAKISEVNEKLAALEKDLGNKIADLEGIVNL
+HEKDIINIYNKISSVNEELNNKIAATEEKLSRKDEEISAMVELHEKDIINLYNKVAALNEDLNKKILDTK
+AELSAKIESQEKTLNMVYTKLLDTESKLNDEISALKEKDAEIQKTVDLHEQDIVNLYGKTSSLEEDLNMK
+YNETNEKIDQVKAELEDKIESVKAYNRNLSILTGAFFGILGLILIAISGK
+>559960 [OuterMembrane] [Toga] Endo-1,4-beta-xylanase A
+MQVRKRRGLLDVSTAVLVGILAGFLGVVLAASGVLSFGKEASSKGDSSLETVLALSFEGTTEGVVPFGKD
+VVLTASQDVAADGEYSLKVENRTSPWDGVEIDLTGKVKSGADYLLSFQVYQSSDAPQLFNVVARTEDEKG
+ERYDVILDKVVVSDHWKEILVPFSPTFEGTPAKYSLIIVASKNTNFNFYLDKVQVLAPKESGPKVIYETS
+FENGVGDWQPRGDVNIEASSEVAHSGKSSLFISNRQKGWQGAQINLKGILKTGKTYAFEAWVYQNSGQDQ
+TIIMTMQRKYSSDASTQYEWIKSATVPSGQWVQLSGTYTIPAGVTVEDLTLYFESQNPTLEFYVDDVKIV
+DTTSAEIKIEMEPEKEIPALKEVLKDYFKVGVALPSKVFLNPKDIELITKHFNSITAENEMKPESLLAGI
+ENGKLKFRFETADKYIQFVEENGMVIRGHTLVWHNQTPDWFFKDENGNLLSKEAMTERLKEYIHTVVGHF
+KGKVYAWDVVNEAVDPNQPDGLRRSTWYQIMGPDYIELAFKFAREADPDAKLFYNDYNTFEPRKRDIIYN
+LVKDLKEKGLIDGIGMQCHISLATDIKQIEEAIKKFSTIPGIEIHITELDMSVYRDSSSNYPEAPRTALI
+EQAHKMMQLFEIFKKYSNVITNVTFWGLKDDYSWRATRRNDWPLIFDKDHQAKLAYWAIVAPEVLPPLPK
+ESRISEGEAVVVGMMDDSYLMSKPIEILDEEGNVKATIRAVWKDSTIYIYGEVQDKTKKPAEDGVAIFIN
+PNNERTPYLQPDDTYAVLWTNWKTEVNREDVQVKKFVGPGFRRYSFEMSITIPGVEFKKDSYIGFDAAVI
+DDGKWYSWSDTTNSQKTNTMNYGTLKLEGIMVATAKYGTPVIDGEIDEIWNTTEEIETKAVAMGSLDKNA
+TAKVRVLWDENYLYVLAIVKDPVLNKDNSNPWEQDSVEIFIDENNHKTGYYEDDDAQFRVNYMNEQTFGT
+GGSPARFKTAVKLIEGGYIVEAAIKWKTIKPTPNTVIGFNIQVNDANEKGQRVGIISWSDPTNNSWRDPS
+KFGNLRLIK
+>4980557 [Periplasmic] Beta-xylanase
+MKILPSVLILLLGCVPVFSSQNVSLRELAEKLNIYIGFAAINNFWSLSDAEKYMEVARREFNILTPENQM
+KWDTIHPERDRYNFTPAEKHVEFAEENDMIVHGHTLVWHNQLPGWITGREWTKEELLNVLEDHIKTVVSH
+FKGRVKIWDVVNEAVSDSGTYRESVWYKTIGPEYIEKAFRWAKEADPDAILIYNDYSIEEINAKSNFVYN
+MIKELKEKGVPVDGIGFQMHIDYRGLNYDSFRRNLERFAKLGLQIYITEMDVRIPLSGSEEYYLKKQAEV
+CAKIFDICLDNPAVKAIQFWGFTDKYSWVPGFFKGYGKALLFDENYNPKPCYYAIKEVLEKKIEERK
+>6460401 [OuterMembrane] [S-layer] S-layer protein, putative
+MKKSLIALTTALSFGLAAAQTAAPVSAPQVPALTDVPAGHWAKDAIDRLVSRGVILGYPDGTFRGTQNLT
+RYEAAIIIARLLDQMRDGETPAGMTAEDMTALQNAIQELAADLAALGVRVSDLEANAVSKDDFARLEARI
+EEVAAAGGEQGATEALQGQIDDLTARVDEYDALRADVDDNASSIAALNDLTVLLNQDILDLQDRVSAVEA
+AQADFVQRSDFDALGGRVTTVETRVETVNNSLTGRIAALERNAFSVKPSLTIGYSVSRTSRNFDVDRLFP
+LNADGTVANNAFTSGGIDTDTGAQRRDFGDFGNASDPVVAGAAGLYGFADGVSYTVYFTDGSTATFDGLN
+PADYKVPTGKVIDTTKGRNGFGFNNLARYKEGSTDIGISLGFDTSGQFSQVTSGTGGSLFSTAGRLQVNQ
+IDLNFGLVTGLPSDAYVDTNGNGKKDDGEATGRGTYLGSGGTAAILRDPAGNVYRPVFFRFKNATTQFSV
+GNNPVIVTLGQQQKFYFSDYVFDNNYDGRGDGFTVTVDGSNVPVIGAWKPQIKGVYGSRSGLDGTAEAGY
+GVYYRGVRAQITPVGTLTAGIHYAQEGRDMFGAAQNTTSTPSDVTTYGADLHGKAFGVELHSEYATSRVR
+PNTANAAVQTSNAFYARVATRKDNLAFDLNTPAAKFGNDTFGVSLYDLNYRKIDAGYNNVAGISEYGYGS
+YSRTSAQNIAYNPDTGVTAPFANLDRQAYTDANNDGTSDRNADGTVVATNTKIGQMGFGVKAAANLGPVA
+IGGYYDTSTGANGDNANRMTEAGGSAKVAYSIFSLRGTYNTLDSNRPQIYRDAAGTQIIGDAKVRRYAVQ
+ADVTPGLGLFVGAYYRDVNVNGVRSTTDRGLLGRGYLASSFEPGVGNNAYRTGLRCADNNFGTGTRDIDG
+VGGVLNPAVNLDQSRTATCFTSYGVEAGHAGDNANALVKDLFFRVGYSRVYVPTTATATTGDFSGSVTYG
+DARYDRKVGVANVRLAGSFSTTNTQLDSRPAGTRGAVGLIVRTDPLENVPFRPQFNGQVGYYTADNRVAA
+GNYNANATKYGAGVVLNDFLLPQTKIGVRYDGYMAQNRQYTPFDGDGTQGYFSDANNNRRTNLNGVYVEG
+AYQDLIFSYGTYTLSQKDLNGVEYGSGINNGQPARGQTFKISYKVNF
+>15807493 [OuterMembrane] [S-layer] Hexagonally packed intermediate-layer surface protein
+MKKNIALMALTGILTLASCGQNGTGTTPTADACATANTCSVTVNISGVSSADFDVTMDGKTTSMTLSNGQ
+KLPVAKTGTVTLTPKAKDGYTTPAAQSTTISSTNLTPSVNFAYTTVPSTGNGNGNGGTTPTQPFTLNITS
+PTNGAAATTGTPIRVVFTSSVALSSATCKIGNSAAVNAQVSSTGGYCDVTPTTAGGGLITVTGTANGQTV
+SSTVTVDVKAPVVDNRYGTVTPAGDQELTLTNEGIVKDADNGWRRLGQGVSTPSDPNGNVDIYVKGTVNF
+SVNAAAGSKVEVFLARTTGSDVPTNDDVQAGDVLRSVASTSGTETFSLDSRRLAEFDGVRKWIVVRINGT
+QVTYQPVIADNKGPQQPDPELNGVQNAYSNILNNYNNSGLTYVRGDVNVFTGNPSLQDREFGQAPLGSSF
+VQRRPSGFESIRYYLVPETAFGNKALQESDEMLRAKAIKSVATVVSAPVLEPGTVKATSFSRVIGSGATS
+TVTPKAQDNVTYRVYAISRDQLGNETASATYELVRFDNVGPTITGSVIRDTSDLPFASQEPERCLSDIAT
+ITLGGITDNAGGVGLNPGQGLTFTLGGRQIQAGQFDTNQLADGEYTIGFNSLTDALGNPVVSAPTNAKVY
+IDNTDPTVNFNRAVMQGTFASGERVSVESDASDGGCGVYETRLFWDTDNGVVDDATTTPAIGHPVQFARQ
+RVTDGAKADSLNAGWNALQLPNGAGAVYLRALVVDRAGNATISTTPIVVNAKITNQARPLLGGFDAFKRN
+ASAQFMSNSNAISGVNGTAVTPNTTANSALDNILSLDSVGTLTTNAYLPRGATETAITEKIRNVGAYGRF
+DATQWNRIRDYQLNTDPTLRSAYVNAGNLANQRGNNWRIRTPWVELGSSDTANTQQKFDFNSDLLNDFYF
+GRTFGNNDNVNLFSYDQFNGIVSGTAGAYSFYGETVQK
+>15608039 [Periplasmic] [Cellwall] Peptidoglycan-binding protein ArfA
+MASKAGLGQTPATTDARRTQKFYRGSPGRPWLIGAVVIPLLIAAIGYGAFERPQSVTGPTGVLPTLTPTS
+TRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRSLDFSSAEP
+VFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPASGPCAD
+LQSAINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKI
+VADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN
+>15608836 [OuterMembrane] Copper transporter MctB
+MISLRQHAVSLAAVFLALAMGVVLGSGFFSDTLLSSLRSEKRDLYTQIDRLTDQRDALREKLSAADNFDI
+QVGSRIVHDALVGKSVVIFRTPDAHDDDIAAVSKIVGQAGGAVTATVSLTQEFVEANSAEKLRSVVNSSI
+LPAGSQLSTKLVDQGSQAGDLLGIALLSNADPAAPTVEQAQRDTVLAALRETGFITYQPRDRIGTANATV
+VVTGGALSTDAGNQGVSVARFAAALAPRGSGTLLAGRDGSANRPAAVAVTRADADMAAEISTVDDIDAEP
+GRITVILALHDLINGGHVGHYGTGHGAMSVTVSQ
+>57116923 [Periplasmic] [Cellwall] Uncharacterized PE-PGRS family protein PE_PGRS33
+MSFVVTIPEALAAVATDLAGIGSTIGTANAAAAVPTTTVLAAAADEVSAAMAALFSGHAQAYQALSAQAA
+LFHEQFVRALTAGAGSYAAAEAASAAPLEGVLDVINAPALALLGRPLIGNGANGAPGTGANGGDGGILIG
+NGGAGGSGAAGMPGGNGGAAGLFGNGGAGGAGGNVASGTAGFGGAGGAGGLLYGAGGAGGAGGRAGGGVG
+GIGGAGGAGGNGGLLFGAGGAGGVGGLAADAGDGGAGGDGGLFFGVGGAGGAGGTGTNVTGGAGGAGGNG
+GLLFGAGGVGGVGGDGVAFLGTAPGGPGGAGGAGGLFGVGGAGGAGGIGLVGNGGAGGSGGSALLWGDGG
+AGGAGGVGSTTGGAGGAGGNAGLLVGAGGAGGAGALGGGATGVGGAGGNGGTAGLLFGAGGAGGFGFGGA
+GGAGGLGGKAGLIGDGGDGGAGGNGTGAKGGDGGAGGGAILVGNGGNGGNAGSGTPNGSAGTGGAGGLLG
+KNGMNGLP
+>118471339 [Periplasmic] [Cellwall] DNA-binding protein HU homolog
+MNKAELIDVLTTKMGTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVK
+VKPTSVPAFRPGAQFKAVISGAQKLPADGPAVKRGVTAGPAKKAAKKAPAKKAAAKKTATKAAAKKAPAK
+KAATKAPAKKAATKAPAKKAATKAPAKKAATKAPAKKAAAKAPAKKAATKAPAKKAAAKKAPAKKGRR
+>15610938 [Periplasmic] [Cellwall] Cell wall lipase, Cutinase
+MAKNSRRKRHRILAWIAAGAMASVVALVIVAVVIMLRGAESPPSAVPPGVLPPGPTPAHPHKPRPAFQDA
+SCPDVQMISVPGTWESSPQQNPLNPVQFPKALLLKVTGPIAQQFAPARVQTYTVAYTAQFHNPLTTDNQM
+SYNDSRAEGTRAMVAAMTDMNNRCPLTSYVLIGFSQGAVIAGDVASDIGNGRGPVDEDLVLGVTLIADGR
+RQQGVGNQVPPSPRGEGAEITLHEVPVLSGLGLTMTGPRPGGFGALDGRTNEICAQGDLICAAPAQAFSP
+ANLPTTLNTLAGGAGQPVHAMYATPEFWNSDGEPATEWTLNWAHQLIENAPHPKHR
+>57116961 [Extracellular] Probable cutinase cut2
+MNDLLTRRLLTMGAAAAMLAAVLLLTPITVPAGYPGAVAPATAACPDAEVVFARGRFEPPGIGTVGNAFV
+SALRSKVNKNVGVYAVKYPADNQIDVGANDMSAHIQSMANSCPNTRLVPGGYSLGAAVTDVVLAVPTQMW
+GFTNPLPPGSDEHIAAVALFGNGSQWVGPITNFSPAYNDRTIELCHGDDPVCHPADPNTWEANWPQHLAG
+AYVSSGMVNQAADFVAGKLQ
+>15609121 [Extracellular] Probable cutinase Rv1984c
+MTPRSLVRIVGVVVATTLALVSAPAGGRAAHADPCSDIAVVFARGTHQASGLGDVGEAFVDSLTSQVGGR
+SIGVYAVNYPASDDYRASASNGSDDASAHIQRTVASCPNTRIVLGGYSQGATVIDLSTSAMPPAVADHVA
+AVALFGEPSSGFSSMLWGGGSLPTIGPLYSSKTINLCAPDDPICTGGGNIMAHVSYVQSGMTSQAATFAA
+NRLDHAG
+>97048142 [Extracellular] Protein PS1
+MRDTAFRSIKAKAQAKRRSLWIAAGAVPTAIALTMSLAPMASAQSSNLSSDAVVGSIAQGVTDGLTDYLK
+PRVEELPAGEVTYPEIAGLPDGVRVISAEWATSKHVILTIQSAAMPERPIKVQLLLPRDWYSSPNREFPE
+IWALDGLRAIEEQSGWTIETNIEQYYADKNAIVVLPIGGESSFYSDWEEPNNGKNYQWETFLTQELAPIL
+DKGFRSNTDRAITGISMGGTAAVNIATHHPDMFKFVGSFSGYLDTTSAGMPIAISAALADAGGYDANAMW
+GPVGSERWQENDPKSNVDKLKGKTIYVSSGNGADDFGKEDSVAIGPANATGVGLEVISRMTSQTFVDRAN
+QAGVEVVASFRPSGVHSWEYWQFEMTQAFPHIANALGMSTEDRGVECAPVGAIADAVADGAMGTCLTNEY
+DVTGGKAQDFANGRAYWSANTGAFGLVGRINARYSELGGPDSWLGYPTSSELKTPDGRGRFVTFEHGSIY
+WTATTGPWEIPGDMLAAWGTQDYEKGSLGYPTGAAVEYNGGLRQQFEGGYVFRTSNNQSYWVRGEISKKY
+ADDGIFAQLGFPTGNEKLINGGAFQEFEKGNIYWSVSTGAHVILHGDIFDAWGAKGWEQGEYGFPTSDQT
+AITAGGQTIDFQNGTIRQVNGRIEESR
+>15607156 [Periplasmic] [Cellwall] Serine/threonine-protein kinase PknB
+MTTPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPA
+IVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVK
+PANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVL
+TGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGE
+PPEAPKVLTDAERTSLLSSAAGNLSGPRTDPLPRQDLDDTDRDRSIGSVGRWVAVVAVLAVLTVVVTIAI
+NTFGGITRDVQVPDVRGQSSADAIATLQNRGFKIRTLQKPDSTIPPDHVIGTDPAANTSVSAGDEITVNV
+STGPEQREIPDVSTLTYAEAVKKLTAAGFGRFKQANSPSTPELVGKVIGTNPPANQTSAITNVVIIIVGS
+GPATKDIPDVAGQTVDVAQKNLNVYGFTKFSQASVDSPRPAGEVTGTNPPAGTTVPVDSVIELQVSKGNQ
+FVMPDLSGMFWVDAEPRLRALGWTGMLDKGADVDAGGSQHNRVVYQNPPAGTGVNRDGIITLRFGQ
+>15608162 [Extracellular] Lipoprotein LPQU
+MSPRRWLRAVAVIGATAMLLASSCTWQLSLFITDGVPPPPGDPVPPVDTHAGGRPADQLREWAEKRAAAL
+GIPVIALEAYAYAARVAEVENPKCHLAWTTLAGIGRVESHHGTYRGATIAPNGDVSPPIRGVRLDGTGGT
+LRIVDRDGGGLDGDAAVERAMGPMQFISETWRLYGVAARNDGIANVDNIDDAALSAAGYLCWRGKDLATP
+RGWITALRAYNNSVIYARAVRDWATAYAAGHPL
+>15607975 [Extracellular] Lipoprotein LpqQ
+MCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEELAAHFQTDLRE
+PPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGVFH
+RLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVYRLKSSVFISVGVLGIEPAEPIANVILQTIS
+DRIQ
+>15607502 [Extracellular] Membrane protein
+MSNAPEPDRSAGESGSEPAGERSADPGEERTESYPLVPHDAETETVVITTSDNDAAVTQPEAQRERRFTA
+PGFDAKETQVIVTAHEAATEVFQTNQAPTTPPRMPTGMPPKTAVPQSIPPRTEATSVRQRTWGWALAVVV
+IVLALAAIAILGTVLLTRGKHSKMSQEDQVRQAIQSLDIAIQTGDLTALRSLTCGSTRDGYVDYDERDWA
+ETYRRVSAAKQYPVIASIDQVVVNGAHAEANVTTFMAFDPQVRSTRSLDLQFRDDQWKICQSSSN
+>15607319 [Extracellular] Mammalian cell entry protein
+MEDQQSASGDLTQKSVANGESTDTASAATEGHRGEIDAAGEPDERGAAVADSQADEDDSAATAARGGKTR
+ARRSRGRRLAITVGVAAALFVGSAAFAGATVEPYLSERAVVATKLMVARTAANAITTLWTYTPENMDTLA
+DRAANYLSGDFAAQYRRFVDQIAAANKQAKITNDTEVTGAAVESLSGRDAVAIVYTNTTTTSPVTKNIPA
+LKYLSYRLFMKRYDARWLVTRMTTITSLDLTPQV
+>118472180 [OuterMembrane] Porin MspA
+MKAISRVLIAMVAAIAALFTSTGTSHAGLDNELSLVDGQDRTLTVQQWDTFLNGVFPLDRNRLTREWFHS
+GRAKYIVAGPGADEFEGTLELGYQIGFPWSLGVGINFSYTTPNILIDDGDITAPPFGLNSVITPNLFPGV
+SISADLGNGPGIQEVATFSVDVSGAEGGVAVSNAHGTVTGAAGGVLLRPFARLIASTGDSVTTYGEPWNM
+N
+>15643242 [OuterMembrane] [Toga] Hypothetical protein
+MKKLLALFLVLGLLVTAAFAYEDVVKVNVSGTGYFNAYLDEEGIDLEGGISDLSVSISPSSGSVTAPATI
+TAEFSIDVLGTDASLSKIAVTTDLFDLTYYNSDIYGDGYVFYYVGDRALEFTPKLGLEGISLTAYFADIV
+SETDLTNATNDTNNYFDDAVALKLGVTNLDLLDATLFGAFYDTDTNNATSAYGYAAHLNLTGKDILENLV
+VDLAYAYEATSMYLVEAQYSKSFEMEPVTLTVSPYFVYSEGAPTYYDDDSVDGDGWTAPWGSKLVKVGLK
+AEAGVTDEVTFSAELTPTYDLDANSFSLPVTLALAYDSDMAEANVSASWDDAVASATNVTIDANLTVTAV
+ENLTVKAAAQYKVATNELGYNVDTSYVYGPLTTGFFFGTLFDSNSDGTADINDYFTWYLYLKASVAF
+>614101062 [OuterMembrane] Outer membrane protein Rv1973
+MSWSRVIAYGLLPGLALALTCGAGLLKWQDGAVRDAAVARAESVRAATDGTTALLSYRPDTVQHDLESAR
+SRLTGTFLDAYTQLTHDVVIPGAQQKQISAVATVAAAASVSTSADRAVVLLFVNQTITVGKDAPTTAASS
+VRVTLDNINGRWLISQFEPI
+>15607335 [CytoplasmicMembrane] Multidrug efflux ATP-binding/permease protein Rv0194
+MRTNCWWRLSGYVMRHRRDLLLGFGAALAGTVIAVLVPLVTKRVIDDAIAADHRPLAPWAVVLVAAAGAT
+YLLMYVRRYYGGRIAHLVQHDLRMDAFQALLRWDGRQQDRWSSGQLIVRTTNDLQLVQALLFDVPNVLRH
+VLTLLLGVAVMTWLSVPLALLAVLLVPVIGLIAHRSRRLLAAATHCAQEHKAAVTGVVDAAVCGIRVVKA
+FGQEERETVKLVTASRALYAAQLRVARLNAHFGPLLQTLPALGQMAVFALGGWMAAQGSITVGTFVAFWA
+CLTLLARPACDLAGMLTIAQQARAGAVRVLELIDSRPTLVDGTKPLSPEARLSLEFQRVSFGYVADRPVL
+REISLSVRAGETLAVVGAPGSGKSTLASLATRCYDVTQGAVRIGGQDVRELTLDSLRSAIGLVPEDAVLF
+SGTIGANIAYGRPDATPEQIATAARAAHIEEFVNTLPDGYQTAVGARGLTLSGGQRQRIALARALLHQPR
+LLIMDDPTSAVDAVIECGIQEVLREAIADRTAVIFTRRRSMLTLADRVAVLDSGRLLDVGTPDEVWERCP
+RYRELLSPAPDLADDLVVAERSPVCRPVAGLGTKAAQHTNVHNPGPHDHPPGPDPLRRLLREFRGPLALS
+LLLVAVQTCAGLLPPLLIRHGIDVGIRRHVLSALWWAALAGTATVVIRWVVQWGSAMVAGYTGEQVLFRL
+RSVVFAHAQRLGLDAFEDDGDAQIVTAVTADVEAIVAFLRTGLVVAVISVVTLVGILVALLAIRARLVLL
+IFTTMPVLALATWQFRRASNWTYRRARHRLGTVTATLREYAAGLRIAQAFRAEYRGLQSYFAHSDDYRRL
+GVRGQRLLALYYPFVALLCSLATTLVLLDGAREVRAGVISVGALVTYLLYIELLYTPIGELAQMFDDYQR
+AAVAAGRIRSLLSTRTPSSPAARPVGTLRGEVVFDAVHYSYRTREVPALAGINLRIPAGQTVVFVGSTGS
+GKSTLIKLVARFYDPTHGTVRVDGCDLREFDVDGYRNRLGIVTQEQYVFAGTVRDAIAYGRPDATDAQVE
+RAAREVGAHPMITALDNGYLHQVTAGGRNLSAGQLQLLALARARLVDPDILLLDEATVALDPATEAVVQR
+ATLTLAARRTTLIVAHGLAIAEHADRIVVLEHGTVVEDGAHTELLAAGGHYSRLWAAHTRLCSPEITQLQ
+CIDA

psort/conf/analysis/sclblast/grampos/sclblast

@@ -80874,3 +80874,44 @@ TPSVTTPPSSNVETPQPTSPTTKQAQKEINPKFKGLRSYYTKSSLEFKNELGIIIKKWTT
 IRFMNIVPDYFIYKIALVGKDDKKYGEGVHRHVDVFIVLEQNKYGVDKYSVGGITKANRK
 KVDYKTGISITKEDKKGTISHDVSEYKITKEEISLKELDFKLRKQLIEQHNLYGNIGSGT
 IVIKMKNGGKYTFELHKKLQQHRMADVIDGTNIDRIEVNLKSS
+
+>145559529 [Cellwall,Extracellular] [S-layer] Cell surface glycoprotein 1
+MKRKNKVLSILLTLLLIISTTSVNMSFAEATPSIEMVLDKTEVHVGDVITATIKVNNIRKLAGYQLNIKF
+DPEVLQPVDPATGEEFTDKSMPVNRVLLTNSKYGPTPVAGNDIKSGIINFATGYNNLTAYKSSGIDEHTG
+IIGEIGFKVLKKQNTSIRFEDTLSMPGAISGTSLFDWDAETITGYEVIQPDLIVVEAEPLKDASVALELD
+KTKVKVGDIITATIKIENMKNFAGYQLNIKYDPTMLEAIELETGSAIAKRTWPVTGGTVLQSDNYGKTTA
+VANDVGAGIINFAEAYSNLTKYRETGVAEETGIIGKIGFRVLKAGSTAIRFEDTTAMPGAIEGTYMFDWY
+GENIKGYSVVQPGEIVAEGEEPGEEPTEEPVPTETPVDPTPTVTEEPVPSELPDSYVIMELDKTKVKVGD
+IITATIKIENMKNFAGYQLNIKYDPTMLEAIELETGSAIAKRTWPVTGGTVLQSDNYGKTTAVANDVGAG
+IINFAEAYSNLTKYRETGVAEETGIIGKIGFRVLKAGSTAIRFEDTTAMPGAIEGTYMFDWYGENIKGYS
+VVQPGEIVAEGEEPTEEPVPTETPVDPTPTVTEEPVPSELPDSYVIMELDKTKVKEGDVIIATIRVNNIK
+NLAGYQIGIKYDPKVLEAFNIETGDPIDEGTWPAVGGTILKNRDYLPTGVAINNVSKGILNFAAYYVYFD
+DYREEGKSEDTGIIGNIGFRVLKAEDTTIRFEELESMPGSIDGTYMLDWYLNRISGYVVIQPAPIKAASD
+EPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPS
+DEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDE
+PTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP
+SDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSET
+PEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPT
+PSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPS
+DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP
+TPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTP
+SDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPTPTTTPTPTPSTTPTSGSGGS
+GGSGGGGGGGGGTVPTSPTPTPTSKPTSTPAPTEIEEPTPSDVPGAIGGEHRAYLRGYPDGSFRPERNIT
+RAEAAVIFAKLLGADESYGAQSASPYSDLADTHWAAWAIKFATSQGLFKGYPDGTFKPDQNITRAEFATV
+VLHFLTKVKGQEIMSKLATIDISNPKFDDCVGHWAQEFIEKLTSLGYISGYPDGTFKPQNYIKRSESVAL
+INRALERGPLNGAPKLFPDVNESYWAFGDIMDGALDHSYIIEDEKEKFVKLLED
+>43966 [Cellwall,Extracellular] [S-layer] S-layer protein
+MQSSLKKSLYLGLAALSFAGVAAVSTTASAKSYATAGAYSTLKT
+DAATRNVEATGTNALYTKPGTVKGAKVVASKATMAKLASSKKSADYFRAYGVKTTNRG
+SVYYRVVTMDGKYRGYVYGGKSDTAFAGGIKSAETTTKADMPARTTGFYLTDTSKNTL
+WTAPKYTQYKASKVSLYGVAKDTKFTVDQAATKTREGSLYYHVTATNGSGISGWIYAG
+KGFSTTATGTQVLGGLSTDKSVTATNDNSVKIVYRTTDGTQVGSNTWVTSTDGTKAGS
+KVSDKAADQTALEAYINANKPSGYTVTNPNAADATYGNTVYATVSQAATSKVALKVSG
+TPVTTALTTADANDKVAANDTTANGSSVAGSTVYAAGTKLAQLTTDLTGEKGQVVTLT
+AIDTDLEDATFTGTTTYYSDLGKAYHYTYTYNKDSAASSNASTQFGSNVTGTLTATLV
+MGKSTATANGTTWFN
+>502283754 [Extracellular] Micrococcus luteus
+MDTMTLFTTSATRSRRATASIVAGMTLAGAAAVGFSAPAQAATVDTWDRLAECESNGTWDINTGNGFYGG
+VQFTLSSWQAVGGEGYPHQASKAEQIKRAEILQDLQGWGAWPLCSQKLGLTQADADAGDVDATEAAPVAV
+ERTATVQRQSAADEAAAEQAAAAEQAVVAEAETIVVKSGDSLWTLANEYEVEGGWTALYEANKGAVSDAA
+VIYVGQELVLPQA