debian/changelog

+python-biom-format (2.1.7+dfsg-5) unstable; urgency=medium
+
+  * Set upstream metadata fields: Bug-Database, Repository, Repository-
+    Browse.
+  * Fix Build time test
+    Closes: #943622
+
+ -- Andreas Tille <tille@debian.org>  Sun, 22 Dec 2019 07:51:11 +0100
+
 python-biom-format (2.1.7+dfsg-4) unstable; urgency=medium
 
   [ Steve Langasek ]

debian/rules

@@ -9,6 +9,7 @@ export PYBUILD_NAME=biom-format
 export PYBUILD_DESTDIR_python3=debian/python3-$(PYBUILD_NAME)
 export examplepkg=python-$(PYBUILD_NAME)-examples
 export PYBUILD_AFTER_INSTALL_python3=dh_numpy3
+export PYBUILD_BEFORE_TEST=cp -r {dir}/examples {build_dir}
 
 ## When trying better hardening the build fails
 # export DEB_BUILD_MAINT_OPTIONS = hardening=+all
@@ -28,16 +29,6 @@ override_dh_installdocs-indep:
 	dh_installdocs --indep
 	dh_sphinxdoc --indep
 
-override_dh_auto_test:
-ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
-# replace cp by ln to close bug #919586
-	cp -a examples $(shell pybuild --print build_dir --interpreter python)
-	cp -a examples $(shell pybuild --print build_dir --interpreter python3)
-#	ln -s $(CURDIR)/examples $(shell pybuild --print build_dir --interpreter python)
-#	ln -s $(CURDIR)/examples $(shell pybuild --print build_dir --interpreter python3)
-	dh_auto_test
-endif
-
 override_dh_fixperms:
 	dh_fixperms
 	find debian -name exercise_cli.sh -exec chmod +x \{\} \;

debian/upstream/metadata

@@ -14,4 +14,6 @@ Reference:
   DOI: 10.1186/2047-217X-1-7
   URL: http://www.gigasciencejournal.com/content/1/1/7
   eprint: http://www.gigasciencejournal.com/content/pdf/2047-217X-1-7.pdf
-Repository: https://github.com/biocore/biom-format
+Repository: https://github.com/biocore/biom-format.git
+Bug-Database: https://github.com/biocore/biom-format/issues
+Repository-Browse: https://github.com/biocore/biom-format