New upstream version 1.71+dfsg

  matrix:

    - PY_MAJOR_VER: 2

      PYTHON_ARCH: "x86"

    - PY_MAJOR_VER: 3

    - PY_MAJOR_VER: 2

      PYTHON_ARCH: "x86_64"

    - PY_MAJOR_VER: 3

      PYTHON_ARCH: "x86"

    - PY_MAJOR_VER: 3

      PYTHON_ARCH: "x86_64"

matrix:

  fast_finish: true

# Enable MySQL and PostgreSQL for BioSQL tests

services:

  - mysql

  - postgresql

  - mysql

before_build:

  - SET PGUSER=postgres

  - SET PGPASSWORD=Password12!

  - SET PATH=C:\Program Files\PostgreSQL\9.6\bin\;%PATH%

  - psql -U postgres -c "CREATE USER biosql_user WITH PASSWORD 'biosql_pass';"

  - psql -U postgres -c "CREATE DATABASE biosql_test OWNER biosql_user;"

build_script:

# If there's a newer build queued for the same PR, cancel this one

  - conda update conda

  - conda install setuptools numpy mysql-connector-python psycopg2 matplotlib networkx reportlab scipy coverage

  - if "PY_MAJOR_VER"=="2" conda install unittest2

  - pip install . -vvv

  - python setup.py build

test_script:

  - python -c "import sys; print(sys.version)"

# See https://help.github.com/articles/about-codeowners/

# and https://github.com/blog/2392-introducing-code-owners

#

# Lines starting with '#' are comments.

# Each line is a file pattern followed by one or more owners.

#

# These owners will be the default owners for everything in the repo.

# *       @defunkt

#

# Order is important. The last matching pattern has the most precedence.

# So if a pull request only touches javascript files, only these owners

# will be requested to review.

# *.js    @octocat @github/js

#

# You can also use email addresses if you prefer.

# docs/*  docs@example.com

#

Bio/Alphabet @peterjc

Bio/Align/* @peterjc

Bio/AlignIO/* @peterjc

Tests/test_AlignIO* @peterjc

Bio/bgzf.py @peterjc

Tests/test_bgzf*.py @peterjc

Bio/Cluster/* @mdehoon

Tests/test_Cluster*.py @mdehoon

Bio/codonalign/* @zruan

Tests/test_codonalign*.py @zruan

Bio/Entrez/* @mdehoon

Tests/test_Entrez*.py @mdehoon

Bio/GenBank/* @peterjc

Tests/test_GenBank*.py @peterjc

Tests/test_EMBL*.py @peterjc

Bio/Graphics/GenomeDiagram/* @widdowquinn @peterjc

Tests/test_GenomeDiagram*.py @widdowquinn @peterjc

Bio/motifs/* @mdehoon

Tests/test_motifs*.py @mdehoon

Bio/PDB/* @joaorodrigues @lennax

Tests/test_PDB*.py @joaorodrigues @lennax

Bio/Phylo/* @etal

Tests/test_Phylo*.py @etal

Bio/PopGen/* @tiagoantao

Tests/test_PopGen*.py @tiagoantao

Bio/SearchIO/* @bow

Tests/test_SearchIO*.py @bow

Bio/Seq*.py @peterjc

Bio/SeqIO/* @peterjc

Tests/test_Seq* @peterjc

Tests/test_seq* @peterjc

Bio/SeqIO/AbiIO.py @peterjc @bow

Tests/test_SeqIO_AbiIO.py @peterjc @bow

Bio/TogoWS/* @peterjc

Tests/test_TogoWS*.py @peterjc

### Setup

I am reporting a problem with Biopython version, Python version, and operating

system as follows:

```python

import sys; print(sys.version)

import platform; print(platform.python_implementation()); print(platform.platform())

import Bio; print(Bio.__version__)

```

(*Please copy and run the above in your Python, and copy-and-paste the output*)

### Expected behaviour

(*Please fill this in*)

### Actual behaviour

(*Please fill this in, and provide any exception message in full*)

### Steps to reproduce

(*Please fill this in *)

This pull request addresses issue #...

I hereby agree to dual licence this and any previous contributions under both

the _Biopython License Agreement_ **AND** the _BSD 3-Clause License_.

I have read the ``CONTRIBUTING.rst`` file and understand that AppVeyor and

TravisCI will be used to confirm the Biopython unit tests and ``flake8`` style

checks pass with these changes.

I am happy be thanked by name in the ``NEWS.rst`` and ``CONTRIB.rst`` files,

and have added myself to those files as part of this pull request. (*This

acknowledgement is optional. Note we list the names sorted alphabetically.*)

dist

#Ignore backup files from some Unix editors,

\#*.py\#

*~

*.swp

*.bak

#Ignore IntelliJ IDEA directory and project files

.idea

*.iml

#Ignore unittest cache dirctory

.cache/