debian/changelog

+python-biotools (1.2.12-4) unstable; urgency=medium
+
+  * Drop Python2 support
+    Closes: #937607
+  * debhelper-compat 12
+  * Standards-Version: 4.4.0
+
+ -- Andreas Tille <tille@debian.org>  Wed, 04 Sep 2019 14:44:40 +0200
+
 python-biotools (1.2.12-3) unstable; urgency=medium
 
   * Testsuite: autopkgtest-pkg-python

debian/compat

-11

debian/control

@@ -4,41 +4,14 @@ Uploaders: Andreas Tille <tille@debian.org>
 Section: python
 Testsuite: autopkgtest-pkg-python
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                dh-python,
-               python-all,
                python3-all
-Standards-Version: 4.1.4
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/python-biotools
 Vcs-Git: https://salsa.debian.org/med-team/python-biotools.git
 Homepage: https://github.com/sonwell/biotools
 
-Package: python-biotools
-Architecture: all
-Depends: ${python:Depends},
-         ${misc:Depends},
-         python-numpy,
-         python-matplotlib,
-         clustalw,
-         ncbi-blast+ | ncbi-blast+-legacy
-Description: Python bioinformatics utilities for high-throughput genomic sequencing
- This package contains utilities like
-  biotools.align - align sequences (hybrid between Needleman-Wunsch and
-                   Smith-Waterman which is used to find the subsequence
-                   within a larger sequence that best aligns to a reference)
-  biotools.annotation - create annotation files. The annotations can be used
-                        to create a hierarchy among the annotations
-  biotools.BLAST - manage BLAST databases and interface with the BLAST+
-                   standalone program available from NCBI.
-  biotools.clustal - interface to clustalw global (multiple nucleotide or
-                     peptide sequence alignment)
-  biotools.complement - creates the complement of a sequence, which can then be
-                        reversed
-  biotools.sequence - various tools to deal with sequences
-  biotools.translate - translate a nucleotide using the standard genetic code
- .
- This package contains the Python 2 module.
-
 Package: python3-biotools
 Architecture: all
 Depends: ${python3:Depends},

debian/rules

@@ -6,9 +6,4 @@ export LC_ALL=C.UTF-8
 export PYBUILD_NAME=biotools
 
 %:
-	dh $@ --with python2,python3 --buildsystem=pybuild
-
-override_dh_install:
-	dh_install
-	# enable parallel installation by providing /usr/bin/prok-geneseek only in Python3 package
-	rm -rf debian/python-$(PYBUILD_NAME)/usr/bin
+	dh $@ --with python3 --buildsystem=pybuild