debian/changelog

@@ -14,7 +14,8 @@ python-cogent (2019.12.6a-1) UNRELEASED; urgency=medium
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
     Repository-Browse.
   * Fix day-of-week for changelog entry 1.5.3-1.
-  TODO: package scitrack (https://github.com/HuttleyLab/scitrack)
+  TODO: scitrack (#948415 in new)
+        tinydb (https://salsa.debian.org/python-team/modules/tinydb #819649)
 
  -- Andreas Tille <tille@debian.org>  Tue, 07 Jan 2020 20:12:00 +0100
 

debian/control

@@ -11,12 +11,14 @@ Build-Depends: debhelper-compat (= 12),
                python3-matplotlib,
                python3-numpy,
                python3-pandas,
+               python3-scitrack,
+               python3-tqdm,
+               python3-tinydb,
                python3-setuptools,
                python3-sphinx,
                python3-numpydoc,
                python3-nbsphinx,
                python3-sphinxcontrib.bibtex,
-               python3-tqdm,
                cython3,
                ncbi-blast+-legacy,
                bwa [any-amd64],
@@ -40,13 +42,17 @@ Vcs-Browser: https://salsa.debian.org/med-team/python-cogent
 Vcs-Git: https://salsa.debian.org/med-team/python-cogent.git
 Homepage: https://github.com/cogent3/cogent3
 
-Package: python3-cogent
+Package: python3-cogent3
 Architecture: any
 Depends: ${shlibs:Depends},
          ${misc:Depends},
          ${python3:Depends},
          python3-matplotlib,
          python3-pandas
+         python3-plotly,
+         python3-scitrack,
+         python3-tqdm,
+         python3-tinydb
 Recommends: ncbi-blast+-legacy,
             bwa [any-amd64],
             cd-hit,
@@ -82,8 +88,8 @@ Section: doc
 Depends: ${misc:Depends},
          libjs-jquery,
          libjs-underscore
-Suggests: python-cogent (= ${binary:Version})
-Description: docs for python-cogent
+Suggests: python3-cogent3 (= ${binary:Version})
+Description: docs for python3-cogent3
  PyCogent is a software library for genomic biology.
  .
  It is distinguished by many unique built-in capabilities (such as true codon

debian/rules

@@ -42,7 +42,7 @@ FAIL_ON_S390X_TESTS := test_maths.test_optimisers \
 
 FAIL_ON_MIPS_TESTS := test_seqsim.test_sequence_generators
 
-export PYBUILD_NAME=cogent
+export PYBUILD_NAME=cogent3
 
 include /usr/share/dpkg/default.mk