debian/control

@@ -8,12 +8,6 @@ Testsuite: autopkgtest-pkg-python
 Priority: optional
 Build-Depends: debhelper (>= 11~),
                dh-python,
-               python-all,
-               python-all-dev,
-               python-setuptools,
-               python-nose,
-               python-xopen (>= 0.3.2),
-               cython,
                python3-all,
                python3-all-dev,
                python3-setuptools,
@@ -26,22 +20,6 @@ Vcs-Browser: https://salsa.debian.org/med-team/python-cutadapt
 Vcs-Git: https://salsa.debian.org/med-team/python-cutadapt.git
 Homepage: http://pypi.python.org/pypi/cutadapt
 
-Package: python-cutadapt
-Architecture: any
-Depends: ${misc:Depends},
-         ${python:Depends},
-         ${shlibs:Depends}
-Description: Clean biological sequences from high-throughput sequencing reads (Python 2)
- Cutadapt helps with biological sequence clean tasks by finding the adapter
- or primer sequences in an error-tolerant way.
- It can also modify and filter reads in various ways.
- Adapter sequences can contain IUPAC wildcard characters.
- Also, paired-end reads and even colorspace data is supported.
- If you want, you can also just demultiplex your input data, without removing
- adapter sequences at all.
- .
- This package contains the Python 2 module.
-
 Package: python3-cutadapt
 Architecture: any
 Depends: ${misc:Depends},

debian/patches/cython_version.patch

-From: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
-Date: Fri, 2 Dec 2016 13:59:08 +1100
-Subject: cython_version
-
----
- setup.py | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
---- a/setup.py
-+++ b/setup.py
-@@ -10,7 +10,7 @@ from distutils.command.sdist import sdis
- from distutils.command.build_ext import build_ext as _build_ext
- import versioneer
- 
--MIN_CYTHON_VERSION = '0.24'
-+MIN_CYTHON_VERSION = '0.23.2'
- 
- vi = sys.version_info
- if (vi[0] == 2 and vi[1] < 7) or (vi[0] == 3 and vi[1] < 4):

debian/patches/series

-cython_version.patch

debian/rules

@@ -17,24 +17,19 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 
 export PYBUILD_NAME=cutadapt
 
-PYTHON2 := $(shell pyversions -r)
 PYTHON3 := $(shell py3versions -r)
 
 # main packaging script based on dh7 syntax
 %:
-	dh $@ --with python2,python3 --buildsystem=pybuild
+	dh $@ --with python3 --buildsystem=pybuild
 
 override_dh_install:
 	dh_install
 	mkdir -p debian/cutadapt/usr/bin
 	mv debian/python3-cutadapt/usr/bin/cutadapt debian/cutadapt/usr/bin/
-	rm -f debian/python-cutadapt/usr/bin/cutadapt
 
 override_dh_auto_test:
 ifeq ($(filter nocheck,$(DEB_BUILD_OPTIONS)),)
-	for py in $(PYTHON2) ; do\
-	    $$py setup.py nosetests -v ; \
-	done
 	for py in $(PYTHON3) ; do\
 	    $$py setup.py nosetests -v ; \
 	done