Fixed more paths to python

 #-*- coding: utf-8 -*-

 import deeptools.misc

Index: python-deeptools-3.3.0/deeptools/plotPCA.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/plotPCA.py

+++ python-deeptools-3.3.0/deeptools/plotPCA.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import sys

Index: python-deeptools-3.3.0/deeptools/SES_scaleFactor.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/SES_scaleFactor.py

+++ python-deeptools-3.3.0/deeptools/SES_scaleFactor.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import os

Index: python-deeptools-3.3.0/deeptools/alignmentSieve.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/alignmentSieve.py

+++ python-deeptools-3.3.0/deeptools/alignmentSieve.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 import argparse

 import pysam

 import os

Index: python-deeptools-3.3.0/deeptools/bamCompare.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/bamCompare.py

+++ python-deeptools-3.3.0/deeptools/bamCompare.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import argparse  # to parse command line arguments

Index: python-deeptools-3.3.0/deeptools/bamCoverage.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/bamCoverage.py

+++ python-deeptools-3.3.0/deeptools/bamCoverage.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 # own tools

Index: python-deeptools-3.3.0/deeptools/bamPEFragmentSize.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/bamPEFragmentSize.py

+++ python-deeptools-3.3.0/deeptools/bamPEFragmentSize.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import argparse

Index: python-deeptools-3.3.0/deeptools/bigwigCompare.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/bigwigCompare.py

+++ python-deeptools-3.3.0/deeptools/bigwigCompare.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import argparse  # to parse command line arguments

 import sys

Index: python-deeptools-3.3.0/deeptools/computeGCBias.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/computeGCBias.py

+++ python-deeptools-3.3.0/deeptools/computeGCBias.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import time

Index: python-deeptools-3.3.0/deeptools/computeMatrix.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/computeMatrix.py

+++ python-deeptools-3.3.0/deeptools/computeMatrix.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import argparse

Index: python-deeptools-3.3.0/deeptools/computeMatrixOperations.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/computeMatrixOperations.py

+++ python-deeptools-3.3.0/deeptools/computeMatrixOperations.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 import deeptools.heatmapper as heatmapper

 import deeptoolsintervals.parse as dti

 import numpy as np

Index: python-deeptools-3.3.0/deeptools/correctGCBias.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/correctGCBias.py

+++ python-deeptools-3.3.0/deeptools/correctGCBias.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import os

Index: python-deeptools-3.3.0/deeptools/deepBlue.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/deepBlue.py

+++ python-deeptools-3.3.0/deeptools/deepBlue.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 try:

     # python 2

     import xmlrpclib

Index: python-deeptools-3.3.0/deeptools/deeptools_list_tools.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/deeptools_list_tools.py

+++ python-deeptools-3.3.0/deeptools/deeptools_list_tools.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import argparse

Index: python-deeptools-3.3.0/deeptools/estimateReadFiltering.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/estimateReadFiltering.py

+++ python-deeptools-3.3.0/deeptools/estimateReadFiltering.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 import argparse

 import sys

Index: python-deeptools-3.3.0/deeptools/getScaleFactor.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/getScaleFactor.py

+++ python-deeptools-3.3.0/deeptools/getScaleFactor.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import numpy as np

Index: python-deeptools-3.3.0/deeptools/multiBamSummary.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/multiBamSummary.py

+++ python-deeptools-3.3.0/deeptools/multiBamSummary.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import os

Index: python-deeptools-3.3.0/deeptools/multiBigwigSummary.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/multiBigwigSummary.py

+++ python-deeptools-3.3.0/deeptools/multiBigwigSummary.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import sys

Index: python-deeptools-3.3.0/deeptools/plotCorrelation.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/plotCorrelation.py

+++ python-deeptools-3.3.0/deeptools/plotCorrelation.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import sys

Index: python-deeptools-3.3.0/deeptools/plotCoverage.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/plotCoverage.py

+++ python-deeptools-3.3.0/deeptools/plotCoverage.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import os

Index: python-deeptools-3.3.0/deeptools/plotEnrichment.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/plotEnrichment.py

+++ python-deeptools-3.3.0/deeptools/plotEnrichment.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import sys

Index: python-deeptools-3.3.0/deeptools/plotFingerprint.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/plotFingerprint.py

+++ python-deeptools-3.3.0/deeptools/plotFingerprint.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import numpy as np

Index: python-deeptools-3.3.0/deeptools/plotHeatmap.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/plotHeatmap.py

+++ python-deeptools-3.3.0/deeptools/plotHeatmap.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 from __future__ import division

Index: python-deeptools-3.3.0/deeptools/plotProfile.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/plotProfile.py

+++ python-deeptools-3.3.0/deeptools/plotProfile.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

Index: python-deeptools-3.3.0/deeptools/writeBedGraph_bam_and_bw.py

===================================================================

--- python-deeptools-3.3.0.orig/deeptools/writeBedGraph_bam_and_bw.py

+++ python-deeptools-3.3.0/deeptools/writeBedGraph_bam_and_bw.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 import os

Index: python-deeptools-3.3.0/scripts/convertChromsBigWig.py

===================================================================

--- python-deeptools-3.3.0.orig/scripts/convertChromsBigWig.py

+++ python-deeptools-3.3.0/scripts/convertChromsBigWig.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 import sys

 import pyBigWig

Index: python-deeptools-3.3.0/scripts/split_bed_into_multiple_files.py

===================================================================

--- python-deeptools-3.3.0.orig/scripts/split_bed_into_multiple_files.py

+++ python-deeptools-3.3.0/scripts/split_bed_into_multiple_files.py

@@ -1,4 +1,4 @@

-#!/usr/bin/env python

+#!/usr/bin/python3

 # -*- coding: utf-8 -*-

 """

#	 PYTHONPATH=$(CURDIR)/debian/python3-deeptools/usr/lib/python3/dist-packages:/usr/lib/python3/dist-packages nosetests3 -x

override_dh_auto_test:

	 python3 -m unittest discover -v

	 #python3 -m unittest discover -v

	 PYTHONPATH=$(CURDIR) nosetests3 -x -v -s deeptools

override_dh_auto_clean:

	dh_auto_clean

	rm -rf .pytest_cache

	rm -rf .pytest_cache deeptools/__pycache__