New upstream version 3.3.1+ds

# Makefile for Sphinx documentation

#

# You can set these variables from the command line.

SPHINXOPTS    =

SPHINXBUILD   = sphinx-build

PAPER         =

BUILDDIR      = _build

# User-friendly check for sphinx-build

ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1)

$(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/)

endif

# Internal variables.

PAPEROPT_a4     = -D latex_paper_size=a4

PAPEROPT_letter = -D latex_paper_size=letter

ALLSPHINXOPTS   = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .

# the i18n builder cannot share the environment and doctrees with the others

I18NSPHINXOPTS  = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .

.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest coverage gettext

help:

	@echo "Please use \`make <target>' where <target> is one of"

	@echo "  html       to make standalone HTML files"

	@echo "  dirhtml    to make HTML files named index.html in directories"

	@echo "  singlehtml to make a single large HTML file"

	@echo "  pickle     to make pickle files"

	@echo "  json       to make JSON files"

	@echo "  htmlhelp   to make HTML files and a HTML help project"

	@echo "  qthelp     to make HTML files and a qthelp project"

	@echo "  applehelp  to make an Apple Help Book"

	@echo "  devhelp    to make HTML files and a Devhelp project"

	@echo "  epub       to make an epub"

	@echo "  latex      to make LaTeX files, you can set PAPER=a4 or PAPER=letter"

	@echo "  latexpdf   to make LaTeX files and run them through pdflatex"

	@echo "  latexpdfja to make LaTeX files and run them through platex/dvipdfmx"

	@echo "  text       to make text files"

	@echo "  man        to make manual pages"

	@echo "  texinfo    to make Texinfo files"

	@echo "  info       to make Texinfo files and run them through makeinfo"

	@echo "  gettext    to make PO message catalogs"

	@echo "  changes    to make an overview of all changed/added/deprecated items"

	@echo "  xml        to make Docutils-native XML files"

	@echo "  pseudoxml  to make pseudoxml-XML files for display purposes"

	@echo "  linkcheck  to check all external links for integrity"

	@echo "  doctest    to run all doctests embedded in the documentation (if enabled)"

	@echo "  coverage   to run coverage check of the documentation (if enabled)"

clean:

	rm -rf $(BUILDDIR)/*

html:

	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html

	@echo

	@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."

dirhtml:

	$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml

	@echo

	@echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."

singlehtml:

	$(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml

	@echo

	@echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."

pickle:

	$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle

	@echo

	@echo "Build finished; now you can process the pickle files."

json:

	$(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json

	@echo

	@echo "Build finished; now you can process the JSON files."

htmlhelp:

	$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp

	@echo

	@echo "Build finished; now you can run HTML Help Workshop with the" \

	      ".hhp project file in $(BUILDDIR)/htmlhelp."

qthelp:

	$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp

	@echo

	@echo "Build finished; now you can run "qcollectiongenerator" with the" \

	      ".qhcp project file in $(BUILDDIR)/qthelp, like this:"

	@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/deepTools.qhcp"

	@echo "To view the help file:"

	@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/deepTools.qhc"

applehelp:

	$(SPHINXBUILD) -b applehelp $(ALLSPHINXOPTS) $(BUILDDIR)/applehelp

	@echo

	@echo "Build finished. The help book is in $(BUILDDIR)/applehelp."

	@echo "N.B. You won't be able to view it unless you put it in" \

	      "~/Library/Documentation/Help or install it in your application" \

	      "bundle."

devhelp:

	$(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp

	@echo

	@echo "Build finished."

	@echo "To view the help file:"

	@echo "# mkdir -p $$HOME/.local/share/devhelp/deepTools"

	@echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/deepTools"

	@echo "# devhelp"

epub:

	$(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub

	@echo

	@echo "Build finished. The epub file is in $(BUILDDIR)/epub."

latex:

	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex

	@echo

	@echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."

	@echo "Run \`make' in that directory to run these through (pdf)latex" \

	      "(use \`make latexpdf' here to do that automatically)."

latexpdf:

	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex

	@echo "Running LaTeX files through pdflatex..."

	$(MAKE) -C $(BUILDDIR)/latex all-pdf

	@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."

latexpdfja:

	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex

	@echo "Running LaTeX files through platex and dvipdfmx..."

	$(MAKE) -C $(BUILDDIR)/latex all-pdf-ja

	@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."

text:

	$(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text

	@echo

	@echo "Build finished. The text files are in $(BUILDDIR)/text."

man:

	$(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man

	@echo

	@echo "Build finished. The manual pages are in $(BUILDDIR)/man."

texinfo:

	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo

	@echo

	@echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."

	@echo "Run \`make' in that directory to run these through makeinfo" \

	      "(use \`make info' here to do that automatically)."

info:

	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo

	@echo "Running Texinfo files through makeinfo..."

	make -C $(BUILDDIR)/texinfo info

	@echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."

gettext:

	$(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale

	@echo

	@echo "Build finished. The message catalogs are in $(BUILDDIR)/locale."

changes:

	$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes

	@echo

	@echo "The overview file is in $(BUILDDIR)/changes."

linkcheck:

	$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck

	@echo

	@echo "Link check complete; look for any errors in the above output " \

	      "or in $(BUILDDIR)/linkcheck/output.txt."

doctest:

	$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest

	@echo "Testing of doctests in the sources finished, look at the " \

	      "results in $(BUILDDIR)/doctest/output.txt."

coverage:

	$(SPHINXBUILD) -b coverage $(ALLSPHINXOPTS) $(BUILDDIR)/coverage

	@echo "Testing of coverage in the sources finished, look at the " \

	      "results in $(BUILDDIR)/coverage/python.txt."

xml:

	$(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml

	@echo

	@echo "Build finished. The XML files are in $(BUILDDIR)/xml."

pseudoxml:

	$(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml

	@echo

	@echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml."

.wy-table-responsive table td {

    white-space: normal !important;

}  

.wy-table-responsive {

    overflow: visible !important;

}