debian/README.test

+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+    sh run-unit-test
+
+in order to confirm its integrity.

debian/changelog

-python-dendropy (4.4.0-2) UNRELEASED; urgency=medium
+python-dendropy (4.4.0-2) unstable; urgency=medium
 
   * Drop Python2 support
     targeting bug #937698
@@ -7,8 +7,10 @@ python-dendropy (4.4.0-2) UNRELEASED; urgency=medium
   * Secure URI in copyright format
   * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
   * Use secure URI in Homepage field.
+  * Do not try running non-existing testsuite
+  * Add autopkgtest
 
- -- Andreas Tille <tille@debian.org>  Tue, 08 Oct 2019 09:01:44 +0200
+ -- Andreas Tille <tille@debian.org>  Tue, 08 Oct 2019 13:24:14 +0200
 
 python-dendropy (4.4.0-1) unstable; urgency=medium
 

debian/patches/do_not_try_running_non-existing_testsuite.patch

+Author: Andreas Tille <tille@debian.org>
+Last-Update: Tue, 08 Oct 2019 09:01:44 +0200
+Description: There is no test suite to run - just data
+ see https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=937698#17
+
+--- a/setup.py
++++ b/setup.py
+@@ -95,7 +95,7 @@ else:
+ EXTRA_KWARGS = dict(
+     install_requires = ['setuptools'],
+     include_package_data = True,
+-    test_suite = "tests",
++#    test_suite = "tests",
+     zip_safe = True,
+     )
+ 

debian/patches/series

+do_not_try_running_non-existing_testsuite.patch

debian/rules

@@ -9,15 +9,6 @@ export PYBUILD_NAME=dendropy
 %:
 	dh $@ --with python3 --buildsystem=pybuild
 
-override_dh_auto_test:
-ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
-	LC_ALL=en_US.utf-8 dh_auto_test || true
-	# FIXME
-	# need to add true since for Python 3.4 5 tests are failing due some
-	# strange encoding problem.  upstream is unable to verify this and
-	# there is no better idea for the moment
-endif
-
 override_dh_install:
 	dh_install
 	mkdir -p debian/$(SUMTREES)/usr/bin

debian/sumtrees.docs

+debian/README.test
+debian/tests/run-unit-test

debian/sumtrees.examples

+tests/data/trees/*.tre

debian/tests/control

+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr

debian/tests/run-unit-test

+#!/bin/bash
+set -e
+
+pkg=sumtrees
+
+export LC_ALL=C.UTF-8
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
+
+cd "${AUTOPKGTEST_TMP}"
+
+gunzip -r *
+
+# Obtained from `sumtrees --usage-examples`
+sumtrees --summary-target consensus \
+         --min-clade-freq=0.95 \
+         --edges mean-length \
+         --burnin=200 \
+         --support-as-labels \
+         --output=pythonidae_result.tre \
+         pythonidae.mlboots.newick.tre  pythonidae.random.bd0301.midpoint-rooted.tre  pythonidae.random.bd0301.tre