Commit 5add7f8d authored by Steffen Möller's avatar Steffen Möller
Browse files

New upstream version 0.4

parent 798e2fde

.editorconfig

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[*.py]

[*.{py,pyx}]

charset=utf-8

end_of_line=lf

insert_final_newline=true

.gitattributes

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*.fastq -crlf

*.fasta -crlf
 
src/dnaio/_version.py export-subst

.gitignore

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@@ -9,3 +9,4 @@ __pycache__ 
/src/*/*.so

/src/*.egg-info/

/.tox/

/src/dnaio/_version.py

.travis.yml

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sudo: false

language: python



dist: xenial



cache:

  directories:

    - $HOME/.cache/pip
@@ -8,13 +10,19 @@ python: 
  - "3.4"

  - "3.5"

  - "3.6"

  - "3.7"

  - "nightly"



install:

  - pip install --upgrade coverage codecov

  - pip install .[dev]



script:

  - pytest

  - coverage run -m pytest



after_success:

  - coverage combine

  - codecov



env:

  global:
@@ -24,13 +32,7 @@ env: 


jobs:

  include:

    - stage: test

      python: "3.7"

      sudo: true  # This may possibly be removed in the future

      dist: xenial



    - stage: deploy

      sudo: required

      services:

        - docker

      python: "3.6"

README.md

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[![Travis](https://travis-ci.org/marcelm/dnaio.svg?branch=master)](https://travis-ci.org/marcelm/dnaio)

[![PyPI](https://img.shields.io/pypi/v/dnaio.svg?branch=master)](https://pypi.python.org/pypi/dnaio)

[![Codecov](https://codecov.io/gh/marcelm/dnaio/branch/master/graph/badge.svg)](https://codecov.io/gh/marcelm/dnaio)



# dnaio parses FASTQ and FASTA



`dnaio` is a Python 3 library for fast parsing of FASTQ and also FASTA files. The code was previously part of the

[cutadapt](https://cutadapt.readthedocs.io/) tool and has been improved since it has been split out.

[Cutadapt](https://cutadapt.readthedocs.io/) tool and has been improved since it has been split out.





## Example usage