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Commit ad163323 authored by Liubov Chuprikova's avatar Liubov Chuprikova
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Initial packaging

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Notes on how this package can be tested.
────────────────────────────────────────
This package can be tested by running the provided test:
sh run-unit-test
in order to confirm its integrity.
python-dnaio (0.3-1) UNRELEASED; urgency=medium
* Initial release (Closes: #<bug>)
-- Liubov Chuprikova <chuprikovalv@gmail.com> Sat, 22 Jun 2019 23:00:31 +0200
12
Source: python-dnaio
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Liubov Chuprikova <chuprikovalv@gmail.com>
Build-Depends: debhelper (>= 12~)
Standards-Version: 4.3.0
Vcs-Browser: https://salsa.debian.org/med-team/python-dnaio
Vcs-Git: https://salsa.debian.org/med-team/python-dnaio.git
Homepage: https://github.com/marcelm/dnaio
Package: python3-dnaio
Architecture: all
Depends: ${shlibs:Depends}, ${misc:Depends}
Description: Python 3 library for fast parsing of FASTQ and FASTA files
dnaio is a Python 3 library for fast parsing of FASTQ and also FASTA files.
The code was previously part of the cutadapt tool and has been improved
since it has been split out.
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: <pkg>
Source: <path_to_download>
Comment: **** Before manually editing this file you should give ****
scan-copyrights
**** available in cme + lib-config-model-dpkg-perl ****
**** package a try. For existing copyright files try ****
cme update dpkg-copyright
Files: *
Copyright: 20xx-20yy <upstream>
License: <license>
Files: debian/*
Copyright: 2019 <your_ID>
License: <license>
#!/usr/bin/make -f
# DH_VERBOSE := 1
export LC_ALL=C.UTF-8
include /usr/share/dpkg/default.mk
# this provides:
# DEB_SOURCE: the source package name
# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)
# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision
# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch
# DEB_VERSION_UPSTREAM: the package's upstream version
# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog
# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as
# specified by <https://reproducible-builds.org/specs/source-date-epoch/>
# for hardening you might like to uncomment this:
# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
%:
dh $@
### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected
#override_dh_auto_test:
#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
# do_stuff_for_testing
#endif
### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script
#get-orig-source:
# . debian/get-orig-source
3.0 (quilt)
Tests: run-unit-test
Depends: @
Restrictions: allow-stderr
#!/bin/bash
set -e
pkg=#PACKAGENAME#
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
# Double quote below to expand the temporary directory variable now versus
# later is on purpose.
# shellcheck disable=SC2064
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
#do_stuff_to_test_package#
Reference:
Author:
Title:
Journal:
Year:
Volume:
Number:
Pages:
DOI:
PMID:
URL:
eprint:
version=4
https://github.com/marcelm/dnaio/releases/latest .*/archive/v?@ANY_VERSION@@ARCHIVE_EXT@
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