Add an autopkgtest

Tests: run-unit-test

Depends: @

Depends: @, unicycler-data

Restrictions: allow-stderr

#!/bin/bash

set -e

pkg=#PACKAGENAME#

test_pkg=dnaio

# using these data for testing

source_pkg=unicycler-data

if [ "${AUTOPKGTEST_TMP}" = "" ] ; then

  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)

  # Double quote below to expand the temporary directory variable now versus

  # later is on purpose.

  # shellcheck disable=SC2064

  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${test_pkg}-test.XXXXXX)

  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM

fi

cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"

if [ -d /usr/share/${source_pkg}/sample_data ] ; then

  cp -a /usr/share/${source_pkg}/sample_data/ ${AUTOPKGTEST_TMP}

else

  echo "Please install package unicycler-data to run this script"

  exit 1

fi

cd ${AUTOPKGTEST_TMP}

cat > simple_test.py << EOL

import os

import dnaio

dir = 'sample_data'

for filename in os.listdir(dir):

    print(filename)

    with dnaio.open(dir + '/' + filename) as inf:

        bp = 0

        for record in inf:

            bp += len(record)

    print(f'The input file contains {bp/1E6:.1f} Mbp')

EOL

cd "${AUTOPKGTEST_TMP}"

# run test

python3 ./simple_test.py

#do_stuff_to_test_package#

echo "PASS"