New upstream version 0.9 (5d634a66) · Commits · Debian Med / python-gffutils

PKG-INFO

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		Metadata-Version: 1.1
		Name: gffutils
		Version: 0.8.7.1
		Version: 0.9
		Summary: Work with GFF and GTF files in a flexible database framework
		Home-page: none
		Home-page: https://github.com/daler/gffutils
		Author: Ryan Dale
		Author-email: dalerr@niddk.nih.gov
		License: UNKNOWN
		Description: UNKNOWN
		Platform: UNKNOWN
		Classifier: Intended Audience :: Science/Research
		Classifier: License :: OSI Approved :: GNU General Public License (GPL)
		Classifier: License :: OSI Approved :: MIT License
		Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
		Classifier: Programming Language :: Python
		Classifier: Programming Language :: Python :: 2
		@@ -17,4 +17,7 @@ Classifier: Programming Language :: Python :: 2.6
		Classifier: Programming Language :: Python :: 2.7
		Classifier: Programming Language :: Python :: 3
		Classifier: Programming Language :: Python :: 3.3
		Classifier: Programming Language :: Python :: 3.4
		Classifier: Programming Language :: Python :: 3.5
		Classifier: Programming Language :: Python :: 3.6
		Classifier: Topic :: Software Development :: Libraries :: Python Modules

README.rst

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		@@ -9,10 +9,11 @@
		:target: https://pypi.python.org/pypi/gffutils


		See docs at http://daler.github.io/gffutils.

		``gffutils`` is a Python package for working with and manipulating the GFF and
		GTF format files typically used for genomic annotations. Files are loaded into
		a sqlite3 database, allowing much more complex manipulation of hierarchical
		features (e.g., genes, transcripts, and exons) than is possible with plain-text
		methods alone.

		See documentation at http://daler.github.io/gffutils.

doc/source/_templates/class.rst

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		{{ fullname }}
		{{ underline }}

		.. currentmodule:: {{ module }}

		.. autoclass:: {{ objname }}

		{% block methods %}
		.. automethod:: __init__

		{% if methods %}
		.. rubric:: Methods

		.. autosummary::
		{% for item in methods %}
		~{{ name }}.{{ item }}
		{%- endfor %}
		{% endif %}
		{% endblock %}

		{% block attributes %}
		{% if attributes %}
		.. rubric:: Attributes

		.. autosummary::
		{% for item in attributes %}
		~{{ name }}.{{ item }}
		{%- endfor %}
		{% endif %}
		{% endblock %}

gffutils.egg-info/PKG-INFO

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Original line number	Diff line number	Diff line
		Metadata-Version: 1.1
		Name: gffutils
		Version: 0.8.7.1
		Version: 0.9
		Summary: Work with GFF and GTF files in a flexible database framework
		Home-page: none
		Home-page: https://github.com/daler/gffutils
		Author: Ryan Dale
		Author-email: dalerr@niddk.nih.gov
		License: UNKNOWN
		Description: UNKNOWN
		Platform: UNKNOWN
		Classifier: Intended Audience :: Science/Research
		Classifier: License :: OSI Approved :: GNU General Public License (GPL)
		Classifier: License :: OSI Approved :: MIT License
		Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
		Classifier: Programming Language :: Python
		Classifier: Programming Language :: Python :: 2
		@@ -17,4 +17,7 @@ Classifier: Programming Language :: Python :: 2.6
		Classifier: Programming Language :: Python :: 2.7
		Classifier: Programming Language :: Python :: 3
		Classifier: Programming Language :: Python :: 3.3
		Classifier: Programming Language :: Python :: 3.4
		Classifier: Programming Language :: Python :: 3.5
		Classifier: Programming Language :: Python :: 3.6
		Classifier: Topic :: Software Development :: Libraries :: Python Modules

gffutils.egg-info/SOURCES.txt

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		@@ -3,6 +3,7 @@ MANIFEST.in
		README.rst
		requirements.txt
		setup.py
		doc/source/_templates/class.rst
		gffutils/__init__.py
		gffutils/attributes.py
		gffutils/bins.py
		@@ -34,23 +35,34 @@ gffutils/test/expected.py
		gffutils/test/feature_test.py
		gffutils/test/helpers_test.py
		gffutils/test/parser_test.py
		gffutils/test/performance_test.py
		gffutils/test/test.py
		gffutils/test/test_biopython_integration.py
		gffutils/test/data/F3-unique-3.v2.gff
		gffutils/test/data/FBgn0031208.gff
		gffutils/test/data/FBgn0031208.gtf
		gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt
		gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt
		gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt
		gffutils/test/data/c_elegans_WS199_ann_gff.txt
		gffutils/test/data/c_elegans_WS199_dna_shortened.fa
		gffutils/test/data/c_elegans_WS199_shortened_gff.txt
		gffutils/test/data/dm6-chr2L.fa
		gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff
		gffutils/test/data/download-large-annotation-files.sh
		gffutils/test/data/ensembl_gtf.txt
		gffutils/test/data/gencode-v19.gtf
		gffutils/test/data/gencode.vM8.5000_gene_ids.txt
		gffutils/test/data/gencode.vM8.5000_transcript_ids.txt
		gffutils/test/data/gencode.vM8.chromsizes.txt
		gffutils/test/data/gff_example1.gff3
		gffutils/test/data/gff_example1.gff3.gz
		gffutils/test/data/glimmer_nokeyval.gff3
		gffutils/test/data/hybrid1.gff3
		gffutils/test/data/intro_docs_example.gff
		gffutils/test/data/jgi_gff2.txt
		gffutils/test/data/keep-order-test.gtf
		gffutils/test/data/keyval_sep_in_attrs.gff
		gffutils/test/data/mouse_extra_comma.gff3
		gffutils/test/data/ncbi_gff3.txt
		gffutils/test/data/nonascii