.circleci/artifact_path

+0/dev/index.html

.coveragerc

@@ -7,3 +7,9 @@ omit =
     */bin/*
     */setup.py
     */mne/fixes*
+    */mne/utils/linalg.py
+
+[report]
+exclude_lines =
+    pragma: no cover
+    if __name__ == .__main__.:

.github/CONTRIBUTING.md

@@ -10,4 +10,4 @@ This project and everyone participating in it is governed by the [MNE-Python's C
 
 ## How to contribute
 
-Before contributing make sure you are familiar with [our contributing guide](https://martinos.org/mne/contributing.html).
+Before contributing make sure you are familiar with [our contributing guide](https://mne.tools/dev/install/contributing.html).

.github/ISSUE_TEMPLATE/bug_report.md

@@ -4,7 +4,7 @@ about: Create a report to help us improve.
 
 ---
 
-Detailed instructions on how to file a bug can be found in our [FAQ](https://martinos.org/mne/stable/faq.html#i-think-i-found-a-bug-what-do-i-do).
+Detailed instructions on how to file a bug can be found in our [FAQ](https://mne.tools/dev/overview/faq.html#i-think-i-found-a-bug-what-do-i-do).
 
 If your issue is a usage question, please consider asking on our [Gitter channel](https://gitter.im/mne-tools/mne-python) or on our [mailing list](https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis) instead of opening an issue.
 

.github/ISSUE_TEMPLATE/glossary.md

+---
+name: Missing glossary entry
+about: Suggest a term to be added to our glossary
+
+---
+
+
+#### Suggested term
+(insert here)
+
+
+#### Suggested definition
+(insert here)

.github/PULL_REQUEST_TEMPLATE.md

 Thanks for contributing a pull request! Please make sure you have read the
-[contribution guidelines](https://martinos.org/mne/stable/contributing.html)
+[contribution guidelines](https://mne.tools/dev/install/contributing.html)
 before submitting.
 
 Please be aware that we are a loose team of volunteers so patience is

.gitignore

+junit-results.xml
 *.pyc
 *.pyo
 *.sh
@@ -37,11 +38,14 @@ MNE-somato-data*
 MNE-spm-face*
 MNE-testing-data*
 MNE-brainstorm-data*
+physionet-sleep-data*
 MEGSIM*
 build
 coverage
 .cache/
 .pytest_cache/
+__pycache__/
+prof/
 
 dist/
 doc/_build/
@@ -51,12 +55,12 @@ doc/auto_tutorials/
 doc/modules/generated/
 doc/sphinxext/cachedir
 pip-log.txt
-.coverage
+.coverage*
 tags
 doc/coverages
 doc/samples
 cover
-examples/visualization/foobar.html
+*.html
 
 *.orig
 
@@ -73,3 +77,5 @@ examples/visualization/foobar.html
 *.py#
 *.rst#
 
+.venv/
+venv/

.lgtm.yml

+extraction:
+  python:
+    index:
+      filters:
+        - exclude: "mne/externals/*.py"
+        - exclude: "mne/externals/*/*.py"
+  javascript:
+    index:
+      filters:
+        - exclude: "**/*.js"
+queries:
+  - exclude: py/missing-equals
+  - exclude: py/import-and-import-from

.mailmap

@@ -25,7 +25,6 @@ Denis A. Engemann <denis.engemann@gmail.com> Denis Engemann <dengemann@pool-186-
 Denis A. Engemann <denis.engemann@gmail.com> Denis A. Engemann <denisaengemann@Denis-A-Engemanns-MacBook-Air.local>
 Daniel Strohmeier <daniel.strohmeier@googlemail.com> joewalter <daniel.strohmeier@googlemail.com>
 Daniel Strohmeier <daniel.strohmeier@googlemail.com> Daniel Strohmeier <daniel.strohmeier@googlemail.com>
-Dan G. Wakeman <dgwakeman@gmail.com>
 Dan G. Wakeman <dgwakeman@gmail.com> dgwakeman <dgwakeman@users.noreply.github.com>
 Teon Brooks <teon.brooks@gmail.com>
 Teon Brooks <teon.brooks@gmail.com> Teon <teon@nyu.edu>
@@ -101,6 +100,7 @@ Lukáš Hejtmánek <hejtmy@gmail.com> hejtmy <hejtmy@gmail.com>
 Ramonapariciog Apariciogarcia <moncho_apa@hotmail.com> ramonapariciog <moncho_apa@hotmail.com>
 Mathurin Massias <mathurin.massias@gmail.com> mathurinm <mathurinm@users.noreply.github.com>
 Simon Kern <simon.kern@online.de> skjerns <simon.kern@online.de>
+Simon Kern <14980558+skjerns@users.noreply.github.com> skjerns
 S. M. Gutstein <s.m.gutstein@gmail.com> smgutstein <s.m.gutstein@gmail.com>
 Robin Tibor Schirrmeister <robintibor@gmail.com> robintibor <robintibor@gmail.com>
 Anne-Sophie Dubarry <as_dub@hotmail.com> annesodub <as_dub@hotmail.com>
@@ -110,11 +110,22 @@ Mathurin Massias <mathurin.massias@gmail.com> mathurinm <mathurin.massias@gmail.
 Pierre Ablin <pierreablin@gmail.com> pierreablin <pierreablin@gmail.com>
 Erik Hornberger <erik.hornberger@shi-g.com> er06645810 <erik.hornberger@shi-g.com>
 Kostiantyn Maksymenko <makkostya@ukr.net> Maksymenko Kostiantyn <makkostya@ukr.net>
-Nathalie Gayraud <nathalie.gayraud@inria.fr> Nathalie <nathalie.gayraud@inria.fr>
+Kostiantyn Maksymenko <makkostya@ukr.net> kostiantyn maksymenko <kostiantyn.maksymenko@inria.fr>
+Nathalie Gayraud <nathalie.gayraud@inria.fr> Nathalie <nat.gayraud@gmail.com>
 Dominik Krzemiński <raymon92@gmail.com> dokato <raymon92@gmail.com>
 Ezequiel Mikulan <39155887+ezemikulan@users.noreply.github.com> ezemikulan <39155887+ezemikulan@users.noreply.github.com>
 Hubert Banville <hubert.jbanville@gmail.com> hubertjb <hubert.jbanville@gmail.com>
 Sara Sommariva <sommariva@dima.unige.it> sarasommariva <sommariva@dima.unige.it>
 Manu Sutela <manu.sutela@gmail.com> MJAS1 <manu.sutela@gmail.com>
-Joan Massich <mailsik@gmail.com> Joan Massich <sik@visor.udg.edu>
+Joan Massich <mailsik@gmail.com> massich <sik@visor.udg.edu>
 David Sabbagh <dav.sabbagh@gmail.com> DavidSabbagh <33925146+DavidSabbagh@users.noreply.github.com>
+Nikolas Chalas <nikos.ch01@gmail.com> Nichalas <nikos.ch01@gmail.com>
+Katarina Slama <slama@berkeley.edu> katarinaslama <slama@berkeley.edu>
+Evgenii Kalenkovich <e.kalenkovich@gmail.com> kalenkovich <e.kalenkovich@gmail.com>
+Thomas Donoghue <tdonoghue.research@gmail.com> Tom <tdonoghue.research@gmail.com>
+Steve Matindi <stevematindi@gmail.com> stevemats <stevematindi@gmail.com>
+Legrand Nicolas <legrand@cyceron.fr> LegrandNico <legrand@cyceron.fr>
+Johannes Kasper <jeythekey@tutanota.com> jeythekey <44215387+jeythekey@users.noreply.github.com>
+Thomas Radman <radman.thomas@gmail.com>
+Joshua J Bear <joshbear@users.noreply.github.com>
+Paul Roujansky <paul@roujansky.eu>

.travis.yml

 language: c
-dist: trusty
-sudo: false
+dist: xenial
 cache:
   apt: true
   pip: true
@@ -8,9 +7,8 @@ env:
     # TRAVIS_PYTHON_VERSION is only needed for neo's setup.py
     # OPENBLAS_NUM_THREADS=1 avoid slowdowns:
     # https://github.com/xianyi/OpenBLAS/issues/731
-    global: PYTHON_VERSION=3.6 DISPLAY=:99.0 MNE_LOGGING_LEVEL=warning TEST_LOCATION=src
-            PIP_DEPENDENCIES="codecov pytest-faulthandler" OPTION=""
-            TRAVIS_PYTHON_VERSION=3.6 CONDA_VERSION=">=4.3.27"
+    global: PYTHON_VERSION=3.7 DISPLAY=:99.0 MNE_LOGGING_LEVEL=warning TEST_LOCATION=src
+            TRAVIS_PYTHON_VERSION=3.7 CONDA_VERSION=">=4.3.27"
             OPENBLAS_NUM_THREADS=1
 
 matrix:
@@ -18,53 +16,67 @@ matrix:
         # No data + style testing
         - os: linux
           env: DEPS=nodata MNE_DONTWRITE_HOME=true MNE_FORCE_SERIAL=true MNE_SKIP_NETWORK_TEST=1
-               CONDA_DEPENDENCIES="numpy scipy matplotlib sphinx pytest pytest-cov"
-               PIP_DEPENDENCIES="flake8 numpydoc codespell git+git://github.com/PyCQA/pydocstyle.git codecov check-manifest"
-               OPTION="--doctest-ignore-import-errors"
+               CONDA_DEPENDENCIES="numpy scipy matplotlib sphinx"
+               PIP_DEPENDENCIES="codecov flake8 numpydoc codespell pydocstyle codecov check-manifest twine"
 
         # Linux
+        # As of 2019/09/19 there is a mysterious joblib bug, so temporarily work around it with MNE_FORCE_SERIAL
         - os: linux
-          env: CONDA_ENVIRONMENT="environment.yml"
+          env: CONDA_ENV="environment.yml"
+               MNE_FORCE_SERIAL=true
 
         # OSX conda
         - os: osx
-          env: CONDA_ENVIRONMENT="environment.yml"
+          env: CONDA_ENV="environment.yml"
 
         # PIP + non-default stim channel
         - os: linux
           env: MNE_STIM_CHANNEL=STI101
           language: python
-          python: "3.6"
-
-        # 2.7 Old dependencies
+          python: "3.7"
+          addons:
+            apt:
+              packages:
+                - qt5-default  # Qt 5.12 release needs this to avoid a missing library bug
+        # Old dependencies
         - os: linux
-          env: PYTHON_VERSION=2.7
-               CONDA_DEPENDENCIES="numpy=1.8 scipy=0.12 matplotlib=1.3 pandas=0.13 scikit-learn=0.15 pytest pytest-cov"
+          env: PYTHON_VERSION=3.5
+               CONDA_DEPENDENCIES="numpy=1.12 scipy=0.18 matplotlib=2.0 pandas=0.19 scikit-learn=0.18"
+               PIP_DEPENDENCIES="codecov nitime"
+               CONDA_CHANNELS="conda-forge"
 
         # Minimal
         - os: linux
           env: DEPS=minimial
-               CONDA_DEPENDENCIES="numpy scipy matplotlib pytest pytest-cov"
+               CONDA_DEPENDENCIES="numpy scipy matplotlib"
+               PIP_DEPENDENCIES="codecov"
 
 # Setup anaconda
 before_install:
     - if [ "${TRAVIS_OS_NAME}" == "linux" ]; then
         /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1400x900x24 -ac +extension GLX +render -noreset;
       fi;
-    - if [ -z "$CONDA_ENVIRONMENT" ] && [ -z "$CONDA_DEPENDENCIES" ]; then
-        pip uninstall -y numpy;
-        pip install numpy scipy vtk;
-        pip install -r requirements.txt;
+    - if [ -z "$CONDA_ENV" ] && [ -z "$CONDA_DEPENDENCIES" ]; then
+        pip uninstall -yq numpy;
+        pip install -f "https://7933911d6844c6c53a7d-47bd50c35cd79bd838daf386af554a83.ssl.cf2.rackcdn.com" --pre numpy scipy;
+        pip install vtk;
+        pip install $PIP_DEPENDENCIES;
+        pip install --upgrade -r requirements.txt;
       else
         git clone https://github.com/astropy/ci-helpers.git;
         source ci-helpers/travis/setup_conda.sh;
-        if [ ! -z "$CONDA_ENVIRONMENT" ]; then
-          pip uninstall --yes mne;
-        fi;
+        if [ ! -z "$CONDA_ENV" ]; then
+          conda activate base;
+          conda env update --file $CONDA_ENV;
+          pip uninstall -yq mne;
+          pip install codecov nitime;
           if [ "${TRAVIS_OS_NAME}" == "osx" ]; then
-          pip install --upgrade pyqt5>=5.10;
+            pip install "pyqt5>=5.10";
+          fi;
         fi;
       fi
+    # Always install these via pip so we get the latest possible versions (testing bugfixes)
+    - pip install --upgrade pytest pytest-sugar pytest-cov pytest-mock pytest-timeout
     # Don't source mne_setup_sh here because changing PATH etc. can't be done in a script
     - if [ "${DEPS}" == "" ]; then
         export MNE_ROOT="${PWD}/minimal_cmds";
@@ -97,17 +109,13 @@ install:
     # files to act as a FREESURFER_HOME for the coreg tests
     - if [ "${DEPS}" != "nodata" ]; then
         python -c 'import mne; mne.datasets.testing.data_path(verbose=True)';
-        ls -al $HOME/mne_data/;
-        ls -al $HOME/mne_data/MNE-testing-data/;
-        ls -al $HOME/mne_data/MNE-testing-data/MEG/;
-        ls -al $HOME/mne_data/MNE-testing-data/MEG/sample/;
-        if [ "${DEPS}" == "" ] && [ "${TRAVIS_OS_NAME}" == "linux" ]; then
-          export FREESURFER_HOME=$(python -c 'import mne; print(mne.datasets.testing.data_path())');
-          export MNE_SKIP_FS_FLASH_CALL=1;
-        fi;
       else
         export MNE_SKIP_TESTING_DATASET_TESTS=true;
       fi;
+    - if [ "${DEPS}" == "" ] && [ "${TRAVIS_OS_NAME}" == "linux" ]; then
+        export FREESURFER_HOME=$(python -c 'import mne; print(mne.datasets.testing.data_path())');
+        export MNE_SKIP_FS_FLASH_CALL=1;
+      fi;
     - MNE_DIR=$(python -c 'import mne;print(mne.__path__[0])')
     # We run two versions: one out of the source directory (that makes
     # coveralls coverage work), and one out of the install directory (that
@@ -124,10 +132,8 @@ install:
         ln -s ${SRC_DIR}/setup.cfg ${MNE_DIR}/../setup.cfg;
         ln -s ${SRC_DIR}/.coveragerc ${MNE_DIR}/../.coveragerc;
         cd ${MNE_DIR}/../;
-        COVERAGE=;
       else
         cd ${SRC_DIR};
-        COVERAGE=--with-coverage;
       fi;
 
 
@@ -165,8 +171,14 @@ script:
           fi;
         done;
       fi;
-    - echo py.test -m "${CONDITION}" ${OPTION} ${USE_DIRS} --cov=mne;
-    - py.test -m "${CONDITION}" ${OPTION} ${USE_DIRS} --cov=mne;
+    # Test run_tests_if_main
+    - if [ "${DEPS}" == "nodata" ]; then
+        pip uninstall -yq mne;
+        pip install -e .;
+        python mne/tests/test_evoked.py;
+      fi;
+    - echo pytest -m "${CONDITION}" --cov=mne ${USE_DIRS}
+    - pytest -m "${CONDITION}" --cov=mne ${USE_DIRS}
     - if [ "${DEPS}" == "nodata" ]; then
         make pep;
       fi;

AUTHORS.rst

-.. -*- mode: rst -*-
-
-Authors
-=======
-
-  * Alexandre Gramfort 2011-2013
-  * Matti Hamalainen 2011-2013
-  * Emily Ruzich 2011
-  * Martin Luessi 2011-2013
-  * Christian Brodbeck 2012-2013
-  * Louis Thibault 2012
-  * Eric Larson 2012-2013
-  * Denis A. Engemann 2012-2013
-  * Daniel Strohmeier 2012
-  * Brad Buran 2013
-  * Simon Kornblith 2013
-  * Mainak Jas 2013
-  * Roman Goj 2013
-  * Teon Brooks 2013

CONTRIBUTING.rst

+Contributing to MNE-Python
+==========================
+
+MNE-Python is maintained by a community of scientists and research labs, and
+accepts contributions in the form of bug reports, fixes, feature additions, and
+documentation improvements (even just typo corrections). The best way to start
+contributing is by `opening an issue`_ on our GitHub page to tell us about
+errors you are encountering or to discuss your ideas for changes. For general
+troubleshooting, you can also write to the `MNE mailing list`_ or chat with
+developers on the `MNE gitter channel`_.
+
+Changes are typically made by `forking`_ the MNE-Python repository, making
+changes to your fork (usually by `cloning`_ it to your personal computer,
+making the changes, and then `pushing`_ the local changes up to your fork), and
+finally creating a `pull request`_ to incorporate your changes back into the
+shared "upstream" version of the codebase. The `contributing guide`_ has more
+details on how best to configure your workflow for a smooth experience
+contributing to MNE-Python.
+
+Users and contributors to MNE-Python are expected to follow our `code of
+conduct`_.
+
+
+.. _`opening an issue`: https://github.com/mne-tools/mne-python/issues/new/choose
+.. _`MNE mailing list`: http://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
+.. _`MNE gitter channel`: https://gitter.im/mne-tools/mne-python
+
+.. _`forking`: https://help.github.com/en/articles/fork-a-repo
+.. _`cloning`: https://help.github.com/en/articles/cloning-a-repository
+.. _`pushing`: https://help.github.com/en/articles/pushing-to-a-remote
+.. _`pull request`: https://help.github.com/en/articles/creating-a-pull-request-from-a-fork
+
+.. _`code of conduct`: https://github.com/mne-tools/mne-python/blob/master/CODE_OF_CONDUCT.md
+.. _`contributing guide`: https://mne-tools.github.io/dev/install/contributing.html

LICENSE.txt

-Copyright © 2011-2016, authors of MNE-Python
+Copyright © 2011-2019, authors of MNE-Python
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without
@@ -8,7 +8,7 @@ modification, are permitted provided that the following conditions are met:
     * Redistributions in binary form must reproduce the above copyright
       notice, this list of conditions and the following disclaimer in the
       documentation and/or other materials provided with the distribution.
-    * Neither the names of MNE-Python authors nor the names of any
+    * Neither the name of the copyright holder nor the names of its
       contributors may be used to endorse or promote products derived from
       this software without specific prior written permission.
 

MANIFEST.in

@@ -13,6 +13,8 @@ recursive-include mne/data *
 recursive-include mne/data/helmets *
 recursive-include mne/data/image *
 recursive-include mne/data/fsaverage *
+include mne/datasets/_fsaverage/root.txt
+include mne/datasets/_fsaverage/bem.txt
 
 recursive-include mne/channels/data/layouts *
 recursive-include mne/channels/data/montages *
@@ -25,6 +27,9 @@ recursive-include mne/html *.css
 
 recursive-include mne/io/artemis123/resources *
 
+recursive-include mne mne/datasets *.csv
+include mne/io/edf/gdf_encodes.txt
+include mne/datasets/sleep_physionet/SHA1SUMS
 
 ### Exclude
 

Makefile

@@ -5,7 +5,7 @@
 PYTHON ?= python
 PYTESTS ?= py.test
 CTAGS ?= ctags
-CODESPELL_SKIPS ?= "*.fif,*.eve,*.gz,*.tgz,*.zip,*.mat,*.stc,*.label,*.w,*.bz2,*.annot,*.sulc,*.log,*.local-copy,*.orig_avg,*.inflated_avg,*.gii,*.pyc,*.doctree,*.pickle,*.inv,*.png,*.edf,*.touch,*.thickness,*.nofix,*.volume,*.defect_borders,*.mgh,lh.*,rh.*,COR-*,FreeSurferColorLUT.txt,*.examples,.xdebug_mris_calc,bad.segments,BadChannels,*.hist,empty_file,*.orig,*.js,*.map,*.ipynb,searchindex.dat,install_mne_c.rst,plot_*.rst,*.rst.txt,c_EULA.rst*,*.html"
+CODESPELL_SKIPS ?= "*.fif,*.eve,*.gz,*.tgz,*.zip,*.mat,*.stc,*.label,*.w,*.bz2,*.annot,*.sulc,*.log,*.local-copy,*.orig_avg,*.inflated_avg,*.gii,*.pyc,*.doctree,*.pickle,*.inv,*.png,*.edf,*.touch,*.thickness,*.nofix,*.volume,*.defect_borders,*.mgh,lh.*,rh.*,COR-*,FreeSurferColorLUT.txt,*.examples,.xdebug_mris_calc,bad.segments,BadChannels,*.hist,empty_file,*.orig,*.js,*.map,*.ipynb,searchindex.dat,install_mne_c.rst,plot_*.rst,*.rst.txt,c_EULA.rst*,*.html,gdf_encodes.txt,*.svg"
 CODESPELL_DIRS ?= mne/ doc/ tutorials/ examples/
 all: clean inplace test test-doc
 
@@ -17,7 +17,7 @@ clean-so:
 	find . -name "*.pyd" | xargs rm -f
 
 clean-build:
-	rm -rf _build
+	rm -rf build dist
 
 clean-ctags:
 	rm -f tags
@@ -31,6 +31,12 @@ in: inplace # just a shortcut
 inplace:
 	$(PYTHON) setup.py build_ext -i
 
+wheel:
+	$(PYTHON) setup.py sdist bdist_wheel
+
+wheel_quiet:
+	$(PYTHON) setup.py -q sdist bdist_wheel
+
 sample_data:
 	@python -c "import mne; mne.datasets.sample.data_path(verbose=True);"
 
@@ -67,7 +73,7 @@ test-no-sample-with-coverage: in testing_data
 	$(PYTESTS) --cov=mne --cov-report html:coverage
 
 test-doc: sample_data testing_data
-	$(PYTESTS) --doctest-modules --doctest-ignore-import-errors --doctest-glob='*.rst' ./doc/
+	$(PYTESTS) --doctest-modules --doctest-ignore-import-errors --doctest-glob='*.rst' ./doc/ --ignore=./doc/auto_examples --ignore=./doc/auto_tutorials --ignore=./doc/_build --fulltrace
 
 test-coverage: testing_data
 	rm -rf coverage .coverage
@@ -115,8 +121,8 @@ docstring:
 check-manifest:
 	check-manifest --ignore .circleci*,doc,logo,mne/io/*/tests/data*,mne/io/tests/data,mne/preprocessing/tests/data,.DS_Store
 
-check-readme:
-	python setup.py check --restructuredtext --strict
+check-readme: clean wheel_quiet
+	twine check dist/*
 
 nesting:
 	@echo "Running import nesting tests"

README.rst

 .. -*- mode: rst -*-
 
 
-|Travis|_ |Appveyor|_ |Circle|_ |Codecov|_ |Zenodo|_
+|Travis|_ |Azure|_ |Circle|_ |Codecov|_ |Zenodo|_
 
 |MNE|_
 
 .. |Travis| image:: https://api.travis-ci.org/mne-tools/mne-python.png?branch=master
 .. _Travis: https://travis-ci.org/mne-tools/mne-python/branches
 
-.. |Appveyor| image:: https://ci.appveyor.com/api/projects/status/jg8ncqql9wayo8mg/branch/master?svg=true
-.. _Appveyor: https://ci.appveyor.com/project/mne-tools/mne-python/branch/master
+.. |Azure| image:: https://dev.azure.com/mne-tools/mne-python/_apis/build/status/mne-tools.mne-python?branchName=master
+.. _Azure: https://dev.azure.com/mne-tools/mne-python/_build/latest?definitionId=1&branchName=master
 
 .. |Circle| image:: https://circleci.com/gh/mne-tools/mne-python.svg?style=svg
 .. _Circle: https://circleci.com/gh/mne-tools/mne-python
@@ -20,8 +20,8 @@
 .. |Zenodo| image:: https://zenodo.org/badge/5822/mne-tools/mne-python.svg
 .. _Zenodo: https://zenodo.org/badge/latestdoi/5822/mne-tools/mne-python
 
-.. |MNE| image:: https://martinos.org/mne/stable/_static/mne_logo.png
-.. _MNE: https://martinos.org/mne
+.. |MNE| image:: https://mne.tools/stable/_static/mne_logo.png
+.. _MNE: https://mne.tools/dev/
 
 MNE-Python
 ==========
@@ -48,10 +48,12 @@ To install the latest stable version of MNE-Python, you can use pip_ in a termin
 
     pip install -U mne
 
-**Note** that MNE-Python 0.17 will be the last release to support Python 2. From MNE-Python 0.18, only Python 3 will be supported.
+**Note** that MNE-Python 0.17 was the last release to support Python 2.
+MNE-Python 0.18 only works under Python 3, and MNE-Python 0.19 requires
+Python 3.5 or higher.
 
 For more complete instructions and more advanced installation methods (e.g. for
-the latest development version), see the `getting started page`_.
+the latest development version), see the `installation guide`_.
 
 
 Get the latest code
@@ -78,28 +80,30 @@ Dependencies
 
 The minimum required dependencies to run MNE-Python are:
 
-- Python >= 2.7
-- NumPy >= 1.8
-- SciPy >= 0.12
+- Python >= 3.5
+- NumPy >= 1.12.1
+- SciPy >= 0.18.1
 
 For full functionality, some functions require:
 
-- Matplotlib >= 1.3
+- Matplotlib >= 2.0.2
 - Mayavi >= 4.6
 - PySurfer >= 0.8
-- Scikit-learn >= 0.15 (>= 0.18 recommended)
+- Scikit-learn >= 0.18.2
+- Numba >= 0.40
 - NiBabel >= 2.1.0
-- Pandas >= 0.13
+- Pandas >= 0.19.2
 - Picard >= 0.3
 - CuPy >= 4.0 (for NVIDIA CUDA acceleration)
 - DIPY >= 0.10.1
+- PyVista >= 0.20.1
 
 Contributing to MNE-Python
 ^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 Please see the documentation on the MNE-Python homepage:
 
-https://martinos.org/mne/contributing.html
+https://mne.tools/dev/install/contributing.html
 
 
 Mailing list
@@ -116,7 +120,7 @@ MNE-Python is **BSD-licenced** (3 clause):
     This software is OSI Certified Open Source Software.
     OSI Certified is a certification mark of the Open Source Initiative.
 
-    Copyright (c) 2011-2017, authors of MNE-Python.
+    Copyright (c) 2011-2019, authors of MNE-Python.
     All rights reserved.
 
     Redistribution and use in source and binary forms, with or without
@@ -147,8 +151,7 @@ MNE-Python is **BSD-licenced** (3 clause):
     damage.**
 
 
-.. _MNE-Python software: https://martinos.org/mne
-.. _MNE documentation: http://martinos.org/mne/documentation.html
-.. _getting started page: https://martinos.org/mne/getting_started.html
+.. _MNE-Python software: https://mne.tools/dev/
+.. _MNE documentation: https://mne.tools/dev/overview/index.html
+.. _installation guide: https://mne.tools/dev/install/index.html
 .. _pip: https://pip.pypa.io/en/stable/
-

appveyor.yml

-environment:
-  global:
-      PYTHON: "C:\\conda"
-      CONDA_ENVIRONMENT: "environment.yml"
-      PIP_DEPENDENCIES: "codecov pytest-faulthandler"
-  matrix:
-      - PYTHON_VERSION: "3.6"
-        PYTHON_ARCH: "64"
-
-install:
-  - "git clone git://github.com/astropy/ci-helpers.git"
-  - "powershell ci-helpers/appveyor/install-miniconda.ps1"
-  - "SET PATH=%PYTHON%;%PYTHON%\\Scripts;%PATH%"
-  - "activate test"
-  - "pip uninstall -yq mne"
-  - "python setup.py develop"
-  - "python -c \"import mne; print(mne.sys_info())\""
-  - "SET MNE_FORCE_SERIAL=true"  # otherwise joblib will bomb
-  - "SET MNE_LOGGING_LEVEL=warning"
-  - "python -c \"import mne; mne.datasets.testing.data_path()\""
-
-build: false  # Not a C# project, build stuff at the test step instead.
-
-test_script:
-  # Run the project tests, but (sadly) exclude ones that take a long time
-  - "py.test -m \"not ultraslowtest\" mne --cov=mne"
-
-on_success:
-  - "codecov"

azure-pipelines.yml

+trigger:
+  # start a new build for every push
+  batch: False
+  branches:
+    include:
+      - master
+      - maint/*
+
+jobs:
+- job: Windows
+  pool:
+    vmIMage: 'VS2017-Win2016'
+  variables:
+    MNE_LOGGING_LEVEL: 'warning'
+    MNE_FORCE_SERIAL: 'true'
+    OPENBLAS_NUM_THREADS: 1
+    AZURE_CI_WINDOWS: 'true'
+    PYTHON_VERSION: '3.7'
+    CONDA_VERSION: '>=4.3.27'
+  strategy:
+    maxParallel: 4
+    matrix:
+      # Eventually we should test x86 (32-bit), but it was a nightmare
+      # to get it to download 32-bit Anaconda properly, and VTK does not ship
+      # 32-bit Windows binaries via pip.
+      Python37-64bit-full-conda:
+        PLATFORM: 'x86-64'
+        TEST_MODE: 'conda'
+        CONDA_ENV: 'environment.yml'
+        PIP_NO_UPGRADE: 'True'
+      Python37-64bit-full-pip:
+        PYTHON_ARCH: 'x64'
+        TEST_MODE: 'pip'
+  steps:
+  - task: UsePythonVersion@0
+    inputs:
+      versionSpec: $(PYTHON_VERSION)
+      architecture: $(PYTHON_ARCH)
+      addToPath: true
+    condition: eq(variables['TEST_MODE'], 'pip')
+  - powershell: |
+      Set-StrictMode -Version Latest
+      $ErrorActionPreference = "Stop"
+      $PSDefaultParameterValues['*:ErrorAction']='Stop'
+      git clone --depth 1 git://github.com/pyvista/gl-ci-helpers.git
+      powershell gl-ci-helpers/appveyor/install_opengl.ps1
+    displayName: Install OpenGL
+  - powershell: |
+      Set-StrictMode -Version Latest
+      $ErrorActionPreference = "Stop"
+      $PSDefaultParameterValues['*:ErrorAction']='Stop'
+      pip install --upgrade numpy scipy vtk
+      pip install --upgrade -r requirements.txt
+      pip install codecov
+    condition: eq(variables['TEST_MODE'], 'pip')
+    displayName: 'Install dependencies with pip'
+  - powershell: |
+      Set-StrictMode -Version Latest
+      $ErrorActionPreference = "Stop"
+      $PSDefaultParameterValues['*:ErrorAction']='Stop'
+      $env:PYTHON = '$(System.DefaultWorkingDirectory)' + '\conda'
+      git clone git://github.com/astropy/ci-helpers.git
+      powershell ci-helpers/appveyor/install-miniconda.ps1
+      $env:PATH = $env:PYTHON + ";" + $env:PYTHON + "\Scripts;" + $env:PYTHON + "\Library\bin;" + $env:PATH
+      conda env list
+      conda install numpy scipy matplotlib scikit-learn
+      conda env update --file $env:CONDA_ENV
+      pip uninstall -yq mne
+      pip install codecov
+      Write-Host ("##vso[task.setvariable variable=PATH]" + $env:PATH)
+    condition: eq(variables['TEST_MODE'], 'conda')
+    displayName: 'Install dependencies with conda'
+  - script: python setup.py develop
+    displayName: 'Install MNE-Python dev'
+  - script: python -c "import mne; print(mne.sys_info())"
+    displayName: 'Print config'
+  - script: python -c "import mne; mne.datasets.testing.data_path(verbose=True)"
+    displayName: 'Get test data'
+  - script: pytest -m "not ultraslowtest" --cov=mne mne
+    displayName: 'Run tests'
+  - script: codecov --root %BUILD_REPOSITORY_LOCALPATH% -t %CODECOV_TOKEN%
+    displayName: 'Codecov'
+    env:
+      CODECOV_TOKEN: $(CODECOV_TOKEN)
+    condition: always()
+  - task: PublishTestResults@2
+    inputs:
+      testResultsFiles: 'junit-*.xml'
+      testRunTitle: 'Publish test results for Python $(python.version)'
+    condition: always()

bin/mne

 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 
-import sys
-import glob
-import subprocess
-import os.path as op
-
 import mne
-
-mne_bin_dir = op.dirname(mne.__file__)
-valid_commands = sorted(glob.glob(op.join(mne_bin_dir,
-                                          'commands', 'mne_*.py')))
-valid_commands = [c.split(op.sep)[-1][4:-3] for c in valid_commands]
-
-
-def print_help():
-    print("Usage : mne command options\n")
-    print("Accepted commands :\n")
-    for c in valid_commands:
-        print("\t- %s" % c)
-    print("\nExample : mne browse_raw --raw sample_audvis_raw.fif")
-    print("\nGetting help example : mne compute_proj_eog -h")
-    sys.exit(0)
-
-
-if len(sys.argv) == 1:
-    print_help()
-elif ("help" in sys.argv[1] or "-h" in sys.argv[1]):
-    print_help()
-elif sys.argv[1] == "--version":
-    print("MNE %s" % mne.__version__)
-elif sys.argv[1] not in valid_commands:
-    print('Invalid command: "%s"\n' % sys.argv[1])
-    print_help()
-    sys.exit(0)
-else:
-    cmd = sys.argv[1]
-    cmd_path = op.join(mne_bin_dir, 'commands', 'mne_%s.py' % cmd)
-    sys.exit(subprocess.call([sys.executable, cmd_path] + sys.argv[2:]))
+mne.commands.utils.main()