Commit 8517fbcf authored by Steffen Möller's avatar Steffen Möller
Browse files

lintian+pbuilder

parent 0ad8e41b

debian/changelog

+4 −1
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@@ -2,7 +2,10 @@ python-pybedtools (0.8.0-1) unstable; urgency=medium 


  * New upstream version.



  * Standards-Version: 4.3.0

  * d/control:

    - Standards-Version: 4.3.0

    - No Python2 packages

    - Vcs links adapted for new home on salsa.d.o



 -- Steffen Moeller <moeller@debian.org>  Thu, 17 Jan 2019 17:39:31 +0100

debian/control

+3 −26
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@@ -7,6 +7,7 @@ Priority: optional 
Build-Depends: debhelper (>= 10),

               dh-python,

               bedtools,

               cython3,

               python3-all-dev,

               python3-setuptools,

               python3-pysam,
@@ -21,34 +22,10 @@ Build-Depends: debhelper (>= 10), 
               r-base-core,

               zlib1g-dev

Standards-Version: 4.3.0

Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/python-pybedtools.git

Vcs-Git: https://anonscm.debian.org/git/debian-med/python-pybedtools.git

Vcs-Browser: https://salsa.debian.org/med-team/python-pybedtools

Vcs-Git: https://salsa.debian.org/med-team/python-pybedtools.git

Homepage: https://daler.github.io/pybedtools/



# cython,

# python-all-dev,

# python-setuptools,

# python-pysam (>= 0.8.1),

# python-matplotlib,

# python-nose,

# python-numpy,

# python-numpydoc,

# python-pandas,

# python-yaml,

# python-tk,



Package: python-pybedtools

Architecture: any

Depends: ${python:Depends},

         ${misc:Depends},

         ${shlibs:Depends},

Description: Python 2 wrapper around BEDTools for bioinformatics work

 The BEDTools suite of programs is widely used for genomic interval

 manipulation or “genome algebra”. pybedtools wraps and extends BEDTools and

 offers feature-level manipulations from within Python.

 .

 This is the Python 2 version.



Package: pybedtools-bin

Architecture: all

Depends: ${python3:Depends},

debian/pybedtools-bin.lintian-overrides

0 → 100644
+10 −0
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# Better not messing with the community which expects these executables

# just the ways these are.

pybedtools-bin: script-with-language-extension usr/bin/annotate.py

pybedtools-bin: script-with-language-extension usr/bin/intersection_matrix.py

pybedtools-bin: script-with-language-extension usr/bin/intron_exon_reads.py

pybedtools-bin: script-with-language-extension usr/bin/pbt_plotting_example.py

pybedtools-bin: script-with-language-extension usr/bin/peak_pie.py

pybedtools-bin: script-with-language-extension usr/bin/venn_gchart.py

pybedtools-bin: script-with-language-extension usr/bin/venn_mpl.py

debian/rules

+10 −6
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@@ -33,10 +33,14 @@ override_dh_auto_test: 
	@echo



override_dh_auto_clean:

	rm -rf fakehome .eggs .pybuild

	rm -rf debian/python3-pybedtools

	rm -rf pybedtools.egg-info

	find pybedtools -name "*.so" -delete

	rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp

	find docs/source/autodocs/ -name "*.rst" | grep -v "pybedtools.contrib.plotting.Track" | xargs -r /bin/rm

	/bin/rm -rf fakehome .eggs .pybuild

	/bin/rm -rf debian/python3-pybedtools debian/files

	/bin/rm -rf pybedtools.egg-info

	/bin/rm -rf pybedtools/scripts/__pycache__/

	/bin/rm -rf pybedtools/contrib/__pycache__/

	/bin/rm -rf pybedtools/__pycache__/

	find pybedtools -name "*.so" -o -name "*.o" | xargs -r rm

	rm -rf build

	/bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp

	find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm

	#dh_auto_clean