debian/changelog

@@ -7,7 +7,14 @@ python-pybedtools (0.8.0-1) unstable; urgency=medium
     - No Python2 packages
     - Vcs links adapted for new home on salsa.d.o
 
- -- Steffen Moeller <moeller@debian.org>  Thu, 17 Jan 2019 17:39:31 +0100
+  * d/copyright
+    - adjusted paths for LGPL 2.1 files
+    - added notion of GPL-2 (not later) files, credits for spotting
+      those go to Thorsten Alteholz
+      Created issue https://github.com/daler/pybedtools/issues/271
+      proposing to homogenize that licensing.
+
+ -- Steffen Moeller <moeller@debian.org>  Sat, 19 Jan 2019 15:41:02 +0100
 
 python-pybedtools (0.7.10-2.1) REMOVED; urgency=medium
 

debian/control

@@ -43,7 +43,8 @@ Package: python3-pybedtools
 Architecture: any
 Depends: ${python3:Depends},
          ${misc:Depends},
-         ${shlibs:Depends},
+         ${shlibs:Depends}
+Suggests: python-pybedtools-doc
 Description: Python 3 wrapper around BEDTools for bioinformatics work
  The BEDTools suite of programs is widely used for genomic interval
  manipulation or “genome algebra”. pybedtools wraps and extends BEDTools and
@@ -51,7 +52,7 @@ Description: Python 3 wrapper around BEDTools for bioinformatics work
  .
  This is the Python 3 version.
 
-Package: python3-pybedtools-doc
+Package: python-pybedtools-doc
 Architecture: all
 Section: doc
 Depends: ${misc:Depends},

debian/copyright

@@ -7,8 +7,40 @@ Copyright: 2010-2015 Ryan Dale
            2009 Aaron Quinlan <aaronquinlan@gmail.com>
 License: GPL-2+
 
-Files: src/gzstream.cpp
-       src/gzstream.h
+Files: pybedtools/include/bedFile.cpp
+       pybedtools/include/bedFile.h
+       pybedtools/include/fileType.cpp
+       pybedtools/include/fileType.h
+Copyright: 2009 - Aaron Quinlan <aaronquinlan@gmail.com>
+                  Hall Laboratory
+                  Department of Biochemistry and Molecular Genetics
+                  University of Virginia
+License: GPL-2
+
+License: GPL-2
+ This program is free software; you can redistribute it
+ and/or modify it under the terms of the GNU General Public
+ License as published by the Free Software Foundation at
+ version 2 of the License.
+ .
+ This program is distributed in the hope that it will be
+ useful, but WITHOUT ANY WARRANTY; without even the implied
+ warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE.  See the GNU General Public License for more
+ details.
+ .
+ You should have received a copy of the GNU General Public
+ License along with this package; if not, write to the Free
+ Software Foundation, Inc., 51 Franklin St, Fifth Floor,
+ Boston, MA  02110-1301 USA
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 2 can be found in the file
+ `/usr/share/common-licenses/GPL-2'.
+
+
+Files: pybedtools/include/gzstream.cpp
+       pybedtools/include/gzstream.h
 Copyright: 2001, Deepak Bandyopadhyay, Lutz Kettner
 License: LGPL-2.1+
  This program is free software; you can redistribute it and/or modify

debian/python3-pybedtools-doc.doc-base → debian/python-pybedtools-doc.doc-base

@@ -7,5 +7,5 @@ Abstract: Python wrapper around BEDTools for bioinformatics work
 Section: Science/Biology
 
 Format: HTML
-Files: /usr/share/doc/python3-pybedtools-doc/html/*
-Index: /usr/share/doc/python3-pybedtools-doc/html/index.html
+Files: /usr/share/doc/python-pybedtools-doc/html/*
+Index: /usr/share/doc/python-pybedtools-doc/html/index.html