New upstream version 0.5.5.2 (064d13a0) · Commits · Debian Med / python-pyfaidx

.travis.yml

+4 −2

Original line number	Diff line number	Diff line
		language: python
		sudo: false
		sudo: required
		dist: xenial
		python:
		- 'nightly'
		- '3.7'
		- '3.6'
		- '3.5'
		- '3.4'
		@@ -36,7 +38,7 @@ deploy:
		secure: MbSaeuitkVTZqxa0PJ3RcR1aMf+B/sMbcx2sWOo9xfLlRFDFpYWJZ0EfXWEhrVu2YWXpBsasgunTDWSi0jNcZMH92MzOC+UTVYr45LO5sy6hm4iSiAgm/DPgYWdjP0SFKr7eL/HWPS+gHvgkXL1upleX21O358bxaezoasuKFvs=
		on:
		all_branches: true
		python: 2.7
		python: 3.6
		tags: true
		repo: mdshw5/pyfaidx
		matrix:

+5 −5

Original line number	Diff line number	Diff line
		@@ -25,7 +25,7 @@ if sys.version_info > (3, ):

		dna_bases = re.compile(r'([ACTGNactgnYRWSKMDVHBXyrwskmdvhbx]+)')

		__version__ = '0.5.5.1'
		__version__ = '0.5.5.2'


		class KeyFunctionError(ValueError):
		@@ -813,7 +813,7 @@ class FastaRecord(object):
		raise

		def __iter__(self):
		""" Construct a line-based iterator that respects the original line lengths. """
		""" Construct a line-based generator that respects the original line lengths. """
		line_len = self._fa.faidx.index[self.name].lenc
		start = 0
		while True:
		@@ -822,11 +822,11 @@ class FastaRecord(object):
		yield self[start:end]
		else:
		yield self[start:]
		raise StopIteration
		return
		start += line_len

		def __reversed__(self):
		""" Reverse line-based iterator """
		""" Reverse line-based generator """
		line_len = self._fa.faidx.index[self.name].lenc
		# have to determine last line length
		last_line = len(self) % line_len
		@@ -839,7 +839,7 @@ class FastaRecord(object):
		yield self[start:end][::-1]
		else:
		yield self[:end][::-1]
		raise StopIteration
		return
		if end == len(self): # first iteration
		end -= last_line
		else: