New upstream version 0.15.0.1+ds

    - g++

script:

  - ./run_tests_travis.sh

  - ./devtools/run_tests_travis.sh

notifications:

  email:

Release notes

=============

Release 0.15.0

==============

This release wraps htslib/samtools/bcftools version 1.9.0.

* [#673] permit dash in chromosome name of region string

* [#656] Support `text` when opening a SAM file for writing

* [#658] return None in get_forward_sequence if sequence not in record

* [#683] allow lower case bases in MD tags

* Ensure that = and X CIGAR ops are treated the same as M

Release 0.14.1

==============

If you are using the conda packaging manager (e.g. miniconda or anaconda),

you can install pysam from the `bioconda channel <https://bioconda.github.io/>`_::

   conda config --add channels r

   conda config --add channels defaults

   conda config --add channels conda-forge

   conda config --add channels bioconda

   conda install pysam

   pip install pysam

Pysam documentation is available through https://readthedocs.org/ from

Pysam documentation is available

`here <http://pysam.readthedocs.org/en/latest/>`_

Questions and comments are very welcome and should be sent to the

BCFtools implements utilities for variant calling (in conjunction with

SAMtools) and manipulating VCF and BCF files.  The program is intended

to replace the Perl-based tools from vcftools.

See INSTALL for building and installation instructions.