debian/changelog

-python-pysam (0.15.1+ds-1) UNRELEASED; urgency=medium
+python-pysam (0.15.1+ds-1) unstable; urgency=medium
+
+  * Team upload.
 
   * New upstream version.
     - Removes autogenerated config.h - [many thanks!]

debian/patches/series

 skip_test_remote.patch
-#skip_test_needing_missing_data.patch
+skip_test_needing_missing_data.patch

debian/patches/skip_test_needing_missing_data.patch

@@ -8,7 +8,7 @@ Index: python-pysam/tests/AlignmentFile_test.py
 ===================================================================
 --- python-pysam.orig/tests/AlignmentFile_test.py
 +++ python-pysam/tests/AlignmentFile_test.py
-@@ -1403,12 +1403,7 @@ class TestEmptyHeader(unittest.TestCase)
+@@ -1402,11 +1402,6 @@ class TestEmptyHeader(unittest.TestCase)
                                               'example_empty_header.bam'))
          self.assertEqual(s.header.to_dict(), {'SQ': [{'LN': 1000, 'SN': 'chr1'}]})
  
@@ -16,8 +16,7 @@ Index: python-pysam/tests/AlignmentFile_test.py
 -        s = pysam.AlignmentFile(os.path.join(BAM_DATADIR, "example_no_seq_in_header.bam"))
 -        self.assertTrue("SQ" in s.header.to_dict())
 -        self.assertTrue("@SQ" in str(s.header))
- 
 -
- class TestHeaderWithProgramOptions(unittest.TestCase):
  
-     '''see issue 39.'''
+ class TestMismatchingHeader(unittest.TestCase):
+     '''see issue 716.'''