Commit 0aca8df1 authored by Andreas Tille's avatar Andreas Tille
Browse files

New upstream version 2.8.1

parent ed6d945f

.travis.yml

+8 −0
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@@ -7,6 +7,14 @@ python: 
  - "3.5"

  - "3.6"



# Travis does not properly support this yet.

# https://github.com/travis-ci/travis-ci/issues/9815

matrix:

  include:

    - python: 3.7

      dist: xenial

      sudo: true



before_install:



install: python setup.py install

doc/conf.py

+1 −1
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@@ -36,7 +36,7 @@ def setup(app): 
# Add any Sphinx extension module names here, as strings. They can be extensions

# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.

extensions = ['sphinx.ext.autodoc', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx', 'sphinx.ext.todo',

              'sphinx.ext.coverage', 'sphinx.ext.pngmath', 'sphinx.ext.mathjax', 'sphinx.ext.ifconfig', 'sphinx.ext.viewcode']

              'sphinx.ext.coverage', 'sphinx.ext.mathjax', 'sphinx.ext.ifconfig', 'sphinx.ext.viewcode']



# Add any paths that contain templates here, relative to this directory.

templates_path = ['_templates']

doc/contents.rst

+1 −1
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@@ -20,7 +20,7 @@ Start Here: 
   gallery.rst

   why_ruffus.rst

   tutorials/new_tutorial/manual_contents.rst



   release.rst





=====================

doc/release.rst

0 → 100644
+23 −0
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*************

Release notes

*************



=============

Release 2.8.1

=============



* [#101] compatibility with gevent >= 1.2

* add lookup_pipeline to exported functions

* fix tests (thanks @LocutusOfBorg, @xnox)



=============

Release 2.8.0

=============



* Ctrl-C will kill drmaa jobs, SIGUSR1 will suspend jobs and SIGUSR2

  will resume.

* [#99] use gevent semaphores

* [#87] run everything through autopep8

* [#86] use pytest for testing

* python3.7 compatibility, thanks to @jbarlow83, @QuLogic

ruffus/__init__.py

+15 −12
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#!/usr/bin/env python

################################################################################

#

#   __init__.py
@@ -28,7 +27,8 @@ 
from .task import Pipeline, Task



# pipeline functions

from .task import pipeline_printout, pipeline_printout_graph, pipeline_run, pipeline_get_task_names, register_cleanup

from .task import pipeline_printout, pipeline_printout_graph, pipeline_run, pipeline_get_task_names, register_cleanup, \

	lookup_pipeline



# decorators

from .task import originate, split, subdivide, transform, merge, collate, follows
@@ -37,19 +37,22 @@ from .task import originate, split, subdivide, transform, merge, collate, follow 
from .task import files, parallel



# filter / indicators

from .task import suffix, regex, formatter, inputs, add_inputs, touch_file

from .task import touch_file

from .file_name_parameters import suffix, regex, formatter, inputs, add_inputs



# deprecated

from .task import files_re, combine

from .task import files_re

from .ruffus_utility import combine



from .task import check_if_uptodate, active_if, jobs_limit, graphviz, mkdir, output_from, posttask

from .task import stderr_logger, black_hole_logger, JobSignalledBreak, runtime_parameter

from .task import check_if_uptodate, active_if, jobs_limit, graphviz, mkdir, posttask

from .ruffus_utility import output_from, runtime_parameter

from .task import stderr_logger, black_hole_logger

from .ruffus_exceptions import JobSignalledBreak

from .graph import graph_colour_demo_printout

from .file_name_parameters import needs_update_check_modify_time

from . import cmdline

from . import combinatorics



# output_dependency_tree_in_dot_format, output_dependency_tree_key_in_dot_format

from . import ruffus_version

__version__ = ruffus_version.__version