Commit e821a2b6 authored Apr 16, 2018 by Andreas Tille

New upstream version 0.2.4

parent 1a0db4a8

.gitignore

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		@@ -80,3 +80,14 @@ sftp-config.json
		*.svg

		!data/

		# OS generated files #
		######################
		.DS_Store
		.DS_Store?
		._*
		.Spotlight-V100
		.Trashes
		Icon?
		ehthumbs.db
		Thumbs.db

.travis_test.sh

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		#export PYTHONPATH="$PYTHONPATH:./test_install"
		nosetests test/test_treetime.py

README.md

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init.py

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		@@ -3,8 +3,10 @@ from treetime.clock_tree import ClockTree
		from treetime.treetime import TreeTime
		from treetime.treetime import ttconf as treetime_conf
		from treetime.gtr import GTR
		from treetime.io import *
		from treetime.treetime import plot_vs_years
		from treetime.treetime import treetime_to_newick
		from treetime import seq_utils
		from treetime.merger_models import Coalescent
		import datetime
		import treetime.seq_utils as seq_utils
		from treetime.utils import numeric_date

ancestral_reconstruction.py→bin/ancestral_reconstruction.py

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