Initial packaging

Notes on how this package can be tested.

────────────────────────────────────────

This package can be tested by running the provided test:

    sh run-unit-test

in order to confirm its integrity.

q2-alignment (2019.1.0-1) UNRELEASED; urgency=medium

  * Initial release (Closes: #<bug>)

  TODO: Package

          q2-types

          sina

 -- Liubov Chuprikova <chuprikovalv@gmail.com>  Mon, 25 Mar 2019 18:41:18 +0100

12

Source: q2-alignment

Section: science

Priority: optional

Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Uploaders: Liubov Chuprikova <chuprikovalv@gmail.com>

Build-Depends: debhelper (>= 12~),

               dh-python,

               python3,

               python3-setuptools,

               qiime

Standards-Version: 4.3.0

Vcs-Browser: https://salsa.debian.org/med-team/q2-alignment

Vcs-Git: https://salsa.debian.org/med-team/q2-alignment.git

Homepage: https://qiime2.org/

Package: q2-alignment

Architecture: any

Depends: ${shlibs:Depends},

         ${misc:Depends},

         ${python3:Depends},

         python3-setuptools,

         python3-skbio,

         qiime,

         q2-types  # TODO

         mafft,

         sina    # TODO

Description: QIIME 2 plugin for generating and manipulating alignments

 <long_description>

Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

Upstream-Name: QIIME 2

Source: https://github.com/qiime2/q2-alignment/releases

Files: *

Copyright: 2016-2018 QIIME 2 development team

License: BSD-3-clause

Files: debian/*

Copyright: 2019 Liubov Chuprikova <chuprikovalv@gmail.com>

                Andreas Tille <tille@debian.org>

License: GPL-2+

License: BSD-3-clause

 Redistribution and use in source and binary forms, with or without

  modification, are permitted provided that the following conditions are met:

  .

  1.  Redistributions of source code must retain the above copyright notice,

      this list of conditions and the following disclaimer.

  .

  2.  Redistributions in binary form must reproduce the above copyright notice,

      this list of conditions and the following disclaimer in the documentation

      and/or other materials provided with the distribution.

  .

  3.  Neither the name of the copyright holder nor the names of its

      contributors may be used to endorse or promote products derived from this

      software without specific prior written permission.

  .

  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"

  AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE

  IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE

  DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE

  FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL

  DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR

  SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER

  CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,

  OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE

  OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

License: GPL-2+

 This program is free software; you can redistribute it and/or modify

 it under the terms of the GNU General Public License as published by

 the Free Software Foundation; either version 2 of the License, or

 (at your option) any later version.

 .

 This program is distributed in the hope that it will be useful,

 but WITHOUT ANY WARRANTY; without even the implied warranty of

 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

 GNU General Public License for more details.

 .

 You should have received a copy of the GNU General Public License along

 with this program; if not, write to the Free Software Foundation, Inc.,

 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.

 .

 For other licensing arrangements, please contact Daniel J. Schaid.

 .

 On a Debian system, the GNU GPL license version 2 is distributed in the

 file /usr/share/common-licenses/GPL-2.