Commit 332c7520 authored by Liubov Chuprikova's avatar Liubov Chuprikova
Browse files

add dependencies, modify d/rules

parent 60299afa

debian/control

+20 −2
Original line number Diff line number Diff line
@@ -3,7 +3,15 @@ Section: science 
Priority: optional

Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Uploaders: Liubov Chuprikova <chuprikovalv@gmail.com>

Build-Depends: debhelper (>= 12~)

Build-Depends: debhelper (>= 12~),

               dh-python,

               python3,

               python3-setuptools,

               python3-pytest-cov,

               python3-biom-format,

               python3-seaborn,

               q2templates,

               q2-types

Standards-Version: 4.3.0

Vcs-Browser: https://salsa.debian.org/med-team/q2-feature-table

Vcs-Git: https://salsa.debian.org/med-team/q2-feature-table.git
@@ -12,7 +20,17 @@ Homepage: https://qiime2.org/ 
Package: q2-feature-table

Architecture: all

Depends: ${shlibs:Depends},

         ${misc:Depends}

         ${misc:Depends},

         ${python3:Depends},

         python3-skbio,

         python3-biom-format,

         python3-h5py,

         python3-seaborn,

         python3-numpy,

         python3-ipywidgets,

         qiime,

         q2templates,

         q2-types

Description: QIIME 2 plugin supporting operations on feature tables

 QIIME 2 is a powerful, extensible, and decentralized microbiome analysis

 package with a focus on data and analysis transparency. QIIME 2 enables

debian/rules

+8 −23
Original line number Diff line number Diff line
@@ -3,29 +3,14 @@ 
# DH_VERBOSE := 1

export LC_ALL=C.UTF-8



include /usr/share/dpkg/default.mk

# this provides:

# DEB_SOURCE: the source package name

# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)

# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision

# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch

# DEB_VERSION_UPSTREAM: the package's upstream version

# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog

# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as

#                    specified by <https://reproducible-builds.org/specs/source-date-epoch/>



# for hardening you might like to uncomment this:

# export DEB_BUILD_MAINT_OPTIONS=hardening=+all

# For testing, we need .egg-info so the entry points are available.

export PYBUILD_BEFORE_TEST=python{version} setup.py develop --install-dir {build_dir}

# Delete .egg-info and other files that were generated along with .egg-info

export PYBUILD_BEFORE_INSTALL=rm -rvf {build_dir}/q2-feature-table.egg-* {build_dir}/site.py \

	{build_dir}/.coverage* {build_dir}/easy-install.pth



%:

	dh $@



### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected

#override_dh_auto_test:

#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))

#	do_stuff_for_testing

#endif

	dh $@ --with python3 --buildsystem=pybuild



### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script

#get-orig-source:

#	. debian/get-orig-source
 
override_dh_auto_test:

	dh_auto_test -- -s custom --test-args="cd {build_dir}; py.test-3 --cov=q2_feature_table"