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Commits on Source (2)
Make build time tests to pass
· 8a867119
Liubov Chuprikova
authored
Mar 28, 2019
8a867119
Add ITP bug number
· 31a459a9
Liubov Chuprikova
authored
Mar 28, 2019
31a459a9
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debian/changelog
View file @
31a459a9
q2-types (2019.1.0-1) UNRELEASED; urgency=medium
* Initial release (Closes: #
<bug>
)
* Initial release (Closes: #
925931
)
-- Liubov Chuprikova <chuprikovalv@gmail.com> Mon, 25 Mar 2019 19:56:36 +0100
debian/control
View file @
31a459a9
...
...
@@ -7,7 +7,7 @@ Build-Depends: debhelper (>= 12~),
dh-python,
python3,
python3-setuptools,
python3-pytest,
python3-pytest
-cov
,
python3-biom-format,
python3-skbio,
python3-ijson,
...
...
@@ -33,4 +33,24 @@ Depends: ${shlibs:Depends},
libopenblas-base,
qiime
Description: QIIME 2 plugin defining types for microbiome analysis
<long_description>
QIIME 2 is a powerful, extensible, and decentralized microbiome analysis
package with a focus on data and analysis transparency. QIIME 2 enables
researchers to start an analysis with raw DNA sequence data and finish with
publication-quality figures and statistical results.
Key features:
* Integrated and automatic tracking of data provenance
* Semantic type system
* Plugin system for extending microbiome analysis functionality
* Support for multiple types of user interfaces (e.g. API, command line,
graphical)
.
QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis
pipeline. QIIME 2 will address many of the limitations of QIIME 1, while
retaining the features that makes QIIME 1 a powerful and widely-used analysis
pipeline.
.
QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline.
New functionality will regularly become available through QIIME 2 plugins. You
can view a list of plugins that are currently available on the QIIME 2 plugin
availability page. The future plugins page lists plugins that are being
developed.
debian/rules
View file @
31a459a9
...
...
@@ -17,15 +17,15 @@ include /usr/share/dpkg/default.mk
# for hardening you might like to uncomment this:
# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
# For testing, we need .egg-info so the entry points are available.
export PYBUILD_BEFORE_TEST=python{version} setup.py develop --install-dir {build_dir}
# Delete .egg-info and other files that were generated along with .egg-info
export PYBUILD_AFTER_TEST=rm -rf {build_dir}/q2-types.egg-* {build_dir}/site.py \
{build_dir}/.coverage* {build_dir}/easy-install.pth
%:
dh $@ --with python3 --buildsystem=pybuild
### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected
#override_dh_auto_test:
#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
# do_stuff_for_testing
#endif
override_dh_auto_test:
dh_auto_test -- -s custom --test-args="cd {build_dir}; py.test-3 --cov=q2_types"
### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script
#get-orig-source:
# . debian/get-orig-source