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debian/README.test deleted 100644 → 0
View file @ 2eef87de
Notes on how this package can be tested.
────────────────────────────────────────
This package can be tested by running the provided test:
sh run-unit-test
in order to confirm its integrity.
debian/changelog
View file @ 546dade6
q2templates (2019.7.0+dfsg-1) unstable; urgency=medium
* New upstream version
* Update and refresh patches
* Standards-Version: 4.4.0
* debhelper-compat 12
-- Liubov Chuprikova <chuprikovalv@gmail.com> Thu, 05 Sep 2019 15:03:37 +0200
q2templates (2019.4.0+dfsg-1) unstable; urgency=medium
q2templates (2019.10.0+dfsg-1) unstable; urgency=medium
* Initial release (Closes: #930151)
-- Liubov Chuprikova <chuprikovalv@gmail.com> Wed, 05 Jun 2019 01:01:15 +0200
-- Liubov Chuprikova <chuprikovalv@gmail.com> Tue, 12 Nov 2019 08:10:21 +0100
debian/control
View file @ 546dade6
Source: q2templates
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Liubov Chuprikova <chuprikovalv@gmail.com>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 12),
dh-python,
python3,
......@@ -10,7 +10,7 @@ Build-Depends: debhelper-compat (= 12),
python3-pytest,
python3-pandas,
python3-jinja2
Standards-Version: 4.4.0
Standards-Version: 4.4.1
Vcs-Browser: https://salsa.debian.org/med-team/q2templates
Vcs-Git: https://salsa.debian.org/med-team/q2templates.git
Homepage: https://qiime2.org/
......
debian/copyright
View file @ 546dade6
......@@ -2,11 +2,23 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: QIIME 2
Source: https://github.com/qiime2/q2templates/releases
Files-Excluded: */*.min.js
*/bootstrap.min.css
*/normalize.css
*/templates/assets/fonts
Files: *
Copyright: 2016-2019 QIIME 2 development team
License: BSD-3-clause
Files: versioneer.py
Copyright: Brian Warner
License: PublicDomain
To make Versioneer easier to embed, all its code is dedicated to the public
domain. The `_version.py` that it creates is also in the public domain.
Specifically, both are released under the Creative Commons "Public Domain
Dedication" license (CC0-1.0), as described in
https://creativecommons.org/publicdomain/zero/1.0/ .
Files: debian/*
Copyright: 2019 Liubov Chuprikova <chuprikovalv@gmail.com>
Andreas Tille <tille@debian.org>
......
debian/rules
View file @ 546dade6
#!/usr/bin/make -f
# DH_VERBOSE := 1
export LC_ALL=C.UTF-8
# include /usr/share/dpkg/default.mk
# this provides:
# DEB_SOURCE: the source package name
# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)
# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision
# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch
# DEB_VERSION_UPSTREAM: the package's upstream version
# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog
# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as
# specified by <https://reproducible-builds.org/specs/source-date-epoch/>
# for hardening you might like to uncomment this:
# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
export PYBUILD_BEFORE_BUILD=rm -rf {dir}/q2templates/templates/assets/fonts; \
rm {dir}/q2templates/templates/assets/css/normalize.css
export PYBUILD_AFTER_INSTALL=ln -s /usr/share/javascript/bootstrap/js/bootstrap.min.js \
export PYBUILD_AFTER_INSTALL=\
ln -s /usr/share/javascript/bootstrap/js/bootstrap.min.js \
{destdir}/{install_dir}/q2templates/templates/assets/js/bootstrap.min.js; \
ln -s /usr/share/javascript/jquery/jquery.min.js \
{destdir}/{install_dir}/q2templates/templates/assets/js/jquery.min.js; \
ln -s /usr/share/javascript/bootstrap/css/bootstrap.min.css \
{destdir}/{install_dir}/q2templates/templates/assets/css/bootstrap.min.css; \
ln -s /usr/share/javascript/normalize.css/normalize.css \
{destdir}/{install_dir}/q2templates/templates/assets/css/normalize.css
{destdir}/{install_dir}/q2templates/templates/assets/css/normalize.css; \
ln -s /usr/share/javascript/bootstrap/fonts \
{destdir}/{install_dir}/q2templates/templates/assets/fonts
%:
dh $@ --with python3 --buildsystem=pybuild
override_dh_auto_test:
dh_auto_test -- -s custom --test-args="cd {build_dir}; py.test-3"
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
dh_auto_test -- --test-args="cd {build_dir}; py.test-3"
endif
debian/tests/control deleted 100644 → 0
View file @ 2eef87de
Tests: run-unit-test
Depends: @
Restrictions: allow-stderr
debian/tests/run-unit-test deleted 100644 → 0
View file @ 2eef87de
#!/bin/bash
set -e
pkg=#PACKAGENAME#
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
# Double quote below to expand the temporary directory variable now versus
# later is on purpose.
# shellcheck disable=SC2064
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
#do_stuff_to_test_package#
debian/upstream/metadata
View file @ 546dade6
......@@ -42,3 +42,4 @@ Reference:
DOI: 10.1038/s41587-019-0209-9
URL: https://www.nature.com/articles/s41587-019-0209-9
eprint: https://www.nature.com/articles/s41587-019-0209-9.pdf
Repository: https://github.com/qiime2/q2templates
q2templates/_version.py
View file @ 546dade6
......@@ -23,9 +23,9 @@ def get_keywords():
# setup.py/versioneer.py will grep for the variable names, so they must
# each be defined on a line of their own. _version.py will just call
# get_keywords().
git_refnames = " (tag: 2019.7.0)"
git_full = "b9219ae56491b2bd01389ce298f77bb3a9cee46a"
git_date = "2019-07-30 18:15:56 +0000"
git_refnames = " (tag: 2019.10.0)"
git_full = "2ea56bdbdb44d38e1bdbc9f9516cc42793911321"
git_date = "2019-11-01 01:04:25 +0000"
keywords = {"refnames": git_refnames, "full": git_full, "date": git_date}
return keywords
......
q2templates/templates/assets/css/bootstrap.min.css deleted 100644 → 0
View file @ 2eef87de
This diff is collapsed.
q2templates/templates/assets/css/normalize.css deleted 100644 → 0
View file @ 2eef87de
/*! normalize.css v5.0.0 | MIT License | github.com/necolas/normalize.css */
/**
* 1. Change the default font family in all browsers (opinionated).
* 2. Correct the line height in all browsers.
* 3. Prevent adjustments of font size after orientation changes in
* IE on Windows Phone and in iOS.
*/
/* Document
========================================================================== */
html {
font-family: sans-serif; /* 1 */
line-height: 1.15; /* 2 */
-ms-text-size-adjust: 100%; /* 3 */
-webkit-text-size-adjust: 100%; /* 3 */
}
/* Sections
========================================================================== */
/**
* Remove the margin in all browsers (opinionated).
*/
body {
margin: 0;
}
/**
* Add the correct display in IE 9-.
*/
article,
aside,
footer,
header,
nav,
section {
display: block;
}
/**
* Correct the font size and margin on `h1` elements within `section` and
* `article` contexts in Chrome, Firefox, and Safari.
*/
h1 {
font-size: 2em;
margin: 0.67em 0;
}
/* Grouping content
========================================================================== */
/**
* Add the correct display in IE 9-.
* 1. Add the correct display in IE.
*/
figcaption,
figure,
main { /* 1 */
display: block;
}
/**
* Add the correct margin in IE 8.
*/
figure {
margin: 1em 40px;
}
/**
* 1. Add the correct box sizing in Firefox.
* 2. Show the overflow in Edge and IE.
*/
hr {
box-sizing: content-box; /* 1 */
height: 0; /* 1 */
overflow: visible; /* 2 */
}
/**
* 1. Correct the inheritance and scaling of font size in all browsers.
* 2. Correct the odd `em` font sizing in all browsers.
*/
pre {
font-family: monospace, monospace; /* 1 */
font-size: 1em; /* 2 */
}
/* Text-level semantics
========================================================================== */
/**
* 1. Remove the gray background on active links in IE 10.
* 2. Remove gaps in links underline in iOS 8+ and Safari 8+.
*/
a {
background-color: transparent; /* 1 */
-webkit-text-decoration-skip: objects; /* 2 */
}
/**
* Remove the outline on focused links when they are also active or hovered
* in all browsers (opinionated).
*/
a:active,
a:hover {
outline-width: 0;
}
/**
* 1. Remove the bottom border in Firefox 39-.
* 2. Add the correct text decoration in Chrome, Edge, IE, Opera, and Safari.
*/
abbr[title] {
border-bottom: none; /* 1 */
text-decoration: underline; /* 2 */
text-decoration: underline dotted; /* 2 */
}
/**
* Prevent the duplicate application of `bolder` by the next rule in Safari 6.
*/
b,
strong {
font-weight: inherit;
}
/**
* Add the correct font weight in Chrome, Edge, and Safari.
*/
b,
strong {
font-weight: bolder;
}
/**
* 1. Correct the inheritance and scaling of font size in all browsers.
* 2. Correct the odd `em` font sizing in all browsers.
*/
code,
kbd,
samp {
font-family: monospace, monospace; /* 1 */
font-size: 1em; /* 2 */
}
/**
* Add the correct font style in Android 4.3-.
*/
dfn {
font-style: italic;
}
/**
* Add the correct background and color in IE 9-.
*/
mark {
background-color: #ff0;
color: #000;
}
/**
* Add the correct font size in all browsers.
*/
small {
font-size: 80%;
}
/**
* Prevent `sub` and `sup` elements from affecting the line height in
* all browsers.
*/
sub,
sup {
font-size: 75%;
line-height: 0;
position: relative;
vertical-align: baseline;
}
sub {
bottom: -0.25em;
}
sup {
top: -0.5em;
}
/* Embedded content
========================================================================== */
/**
* Add the correct display in IE 9-.
*/
audio,
video {
display: inline-block;
}
/**
* Add the correct display in iOS 4-7.
*/
audio:not([controls]) {
display: none;
height: 0;
}
/**
* Remove the border on images inside links in IE 10-.
*/
img {
border-style: none;
}
/**
* Hide the overflow in IE.
*/
svg:not(:root) {
overflow: hidden;
}
/* Forms
========================================================================== */
/**
* 1. Change the font styles in all browsers (opinionated).
* 2. Remove the margin in Firefox and Safari.
*/
button,
input,
optgroup,
select,
textarea {
font-family: sans-serif; /* 1 */
font-size: 100%; /* 1 */
line-height: 1.15; /* 1 */
margin: 0; /* 2 */
}
/**
* Show the overflow in IE.
* 1. Show the overflow in Edge.
*/
button,
input { /* 1 */
overflow: visible;
}
/**
* Remove the inheritance of text transform in Edge, Firefox, and IE.
* 1. Remove the inheritance of text transform in Firefox.
*/
button,
select { /* 1 */
text-transform: none;
}
/**
* 1. Prevent a WebKit bug where (2) destroys native `audio` and `video`
* controls in Android 4.
* 2. Correct the inability to style clickable types in iOS and Safari.
*/
button,
html [type="button"], /* 1 */
[type="reset"],
[type="submit"] {
-webkit-appearance: button; /* 2 */
}
/**
* Remove the inner border and padding in Firefox.
*/
button::-moz-focus-inner,
[type="button"]::-moz-focus-inner,
[type="reset"]::-moz-focus-inner,
[type="submit"]::-moz-focus-inner {
border-style: none;
padding: 0;
}
/**
* Restore the focus styles unset by the previous rule.
*/
button:-moz-focusring,
[type="button"]:-moz-focusring,
[type="reset"]:-moz-focusring,
[type="submit"]:-moz-focusring {
outline: 1px dotted ButtonText;
}
/**
* Change the border, margin, and padding in all browsers (opinionated).
*/
fieldset {
border: 1px solid #c0c0c0;
margin: 0 2px;
padding: 0.35em 0.625em 0.75em;
}
/**
* 1. Correct the text wrapping in Edge and IE.
* 2. Correct the color inheritance from `fieldset` elements in IE.
* 3. Remove the padding so developers are not caught out when they zero out
* `fieldset` elements in all browsers.
*/
legend {
box-sizing: border-box; /* 1 */
color: inherit; /* 2 */
display: table; /* 1 */
max-width: 100%; /* 1 */
padding: 0; /* 3 */
white-space: normal; /* 1 */
}
/**
* 1. Add the correct display in IE 9-.
* 2. Add the correct vertical alignment in Chrome, Firefox, and Opera.
*/
progress {
display: inline-block; /* 1 */
vertical-align: baseline; /* 2 */
}
/**
* Remove the default vertical scrollbar in IE.
*/
textarea {
overflow: auto;
}
/**
* 1. Add the correct box sizing in IE 10-.
* 2. Remove the padding in IE 10-.
*/
[type="checkbox"],
[type="radio"] {
box-sizing: border-box; /* 1 */
padding: 0; /* 2 */
}
/**
* Correct the cursor style of increment and decrement buttons in Chrome.
*/
[type="number"]::-webkit-inner-spin-button,
[type="number"]::-webkit-outer-spin-button {
height: auto;
}
/**
* 1. Correct the odd appearance in Chrome and Safari.
* 2. Correct the outline style in Safari.
*/
[type="search"] {
-webkit-appearance: textfield; /* 1 */
outline-offset: -2px; /* 2 */
}
/**
* Remove the inner padding and cancel buttons in Chrome and Safari on macOS.
*/
[type="search"]::-webkit-search-cancel-button,
[type="search"]::-webkit-search-decoration {
-webkit-appearance: none;
}
/**
* 1. Correct the inability to style clickable types in iOS and Safari.
* 2. Change font properties to `inherit` in Safari.
*/
::-webkit-file-upload-button {
-webkit-appearance: button; /* 1 */
font: inherit; /* 2 */
}
/* Interactive
========================================================================== */
/*
* Add the correct display in IE 9-.
* 1. Add the correct display in Edge, IE, and Firefox.
*/
details, /* 1 */
menu {
display: block;
}
/*
* Add the correct display in all browsers.
*/
summary {
display: list-item;
}
/* Scripting
========================================================================== */
/**
* Add the correct display in IE 9-.
*/
canvas {
display: inline-block;
}
/**
* Add the correct display in IE.
*/
template {
display: none;
}
/* Hidden
========================================================================== */
/**
* Add the correct display in IE 10-.
*/
[hidden] {
display: none;
}