Commit 26011bad authored by Liubov Chuprikova's avatar Liubov Chuprikova
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Add TODO and the dependencies that are ready

parent 248f2b26
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debian/TODO

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TODO for QIIME 2
================

Plugins already accepted (added to the dependencies of qiime)
________________________

 - q2cli
 - q2-cutadapt
 - q2-types


Plugins already in the NEW QUEUE
________________________________

 - q2templates
 - q2-metadata
 - q2-demux (was rejected: third-party script found)
 - q2-quality-filter
 - q2-feature-classifier
 - q2-feature-table
 - q2-taxa


The work already started
________________________

 - q2-alignment:
    TODO: SINA (what the status?)

 - q2-emperor:
    TODO: EMPEROR


The work NOT started yet
________________________

 - q2-composition
 
 - q2-sample-classifier (deps: q2-feature-table)

 - q2-vsearch (deps: q2-feature-table)

 - q2-dada2:
    TODO: DADA2 (R package)

 - q2-deblur:
    TODO: Deblur

 - q2-diversity (deps: q2-feature-table, q2-emperor)
    TODO: unifrac

 - q2-gneiss:
    TODO: gneiss

 - q2-longitudinal (deps: q2-feature-table, q2-sample-classifier)

 - q2-phylogeny (deps: q2-alignment)

 - q2-quality-control (deps: q2-taxa)

 - q2-fragment-insertion (only the first release)
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@@ -33,7 +33,10 @@ Depends: ${shlibs:Depends},
         python3-yaml,
         python3-pyparsing,
         python3-dateutil,
         python3-networkx
         python3-networkx,
         q2cli,
         q2-cutadapt,
         q2-types
Description: Quantitative Insights Into Microbial Ecology
 QIIME 2 is a powerful, extensible, and decentralized microbiome analysis
 package with a focus on data and analysis transparency. QIIME 2 enables