Verified Commit f4113ce1 authored Nov 12, 2019 by Michael R. Crusoe

Set the racon_wrapper to use /usr/bin/rampler

parent 8cd0ae14

debian/changelog

+6 −0

Original line number	Diff line number	Diff line
		racon (1.4.10-2) UNRELEASED; urgency=medium

		* Set the racon_wrapper to use /usr/bin/rampler

		-- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 12 Nov 2019 15:44:13 +0100

		racon (1.4.10-1) unstable; urgency=medium

		* Team upload.

debian/control

+1 −1

Original line number	Diff line number	Diff line
		@@ -21,7 +21,7 @@ Package: racon
		Architecture: any
		Depends: ${shlibs:Depends},
		${misc:Depends}
		Recommends: python3
		Recommends: python3, rampler
		Description: consensus module for raw de novo DNA assembly of long uncorrected reads
		Racon is intended as a standalone consensus module to correct raw
		contigs generated by rapid assembly methods which do not include a

debian/patches/use_debian_packaged_libs.patch

+9 −0

Original line number	Diff line number	Diff line
		@@ -46,3 +46,12 @@ Description: Use Debian packaged libraries
		if (racon_enable_cuda)
		target_link_libraries(racon_test cudapoa cudaaligner)
		endif()
		@@ -130,7 +115,7 @@

		if (racon_build_wrapper)
		set(racon_path ${PROJECT_BINARY_DIR}/bin/racon)
		- set(rampler_path ${PROJECT_BINARY_DIR}/vendor/rampler/bin/rampler)
		+ set(rampler_path /usr/bin/rampler)
		configure_file(${PROJECT_SOURCE_DIR}/scripts/racon_wrapper.py
		${PROJECT_BINARY_DIR}/${CMAKE_FILES_DIRECTORY}/racon_wrapper)
		file(COPY ${PROJECT_BINARY_DIR}/${CMAKE_FILES_DIRECTORY}/racon_wrapper