Another attempt at 2.2

ragout (2.2-1) UNRELEASED; urgency=medium

ragout (2.2-1) unstable; urgency=medium

  [Andreas Tille]

  * New upstream version

  * debhelper-compat 12

  * Standards-Version: 4.4.0

  * Use 2to3 to port to Python3

    Closes: #938330

  TODO: Does not work yet - see

        https://github.com/fenderglass/Ragout/issues/52

  * Use 2to3 to port to Python3 (Closes: #938330)

    also see https://github.com/fenderglass/Ragout/issues/52

  [Steffen Moeller]

  * Not having Python install binaries in setup.py, chaning

    d/ragout.install accordingly

  * bin/ragout was still about to invoke python2

  * not allowing bin/ragout to change $PATH 

  * demoted sibelia to recommends runtime dependency as there are

    modules that don't use it.

    TODO: Find out what happened to

      https://salsa.debian.org/med-team/sibelia

    which is not in new or main.

 -- Andreas Tille <tille@debian.org>  Thu, 05 Sep 2019 10:06:47 +0200

 -- Steffen Moeller <moeller@debian.org>  Sat, 04 Jan 2020 19:07:58 +0100

ragout (2.1.1+dfsg-1) unstable; urgency=medium

Depends: ${shlibs:Depends},

         ${python3:Depends},

         ${misc:Depends},

         sibelia,

         python3-networkx (>= 2.2)

Recommends:

         sibelia

Description: Reference-Assisted Genome Ordering UTility

 Ragout (Reference-Assisted Genome Ordering UTility) is a tool for

 chromosome-level scaffolding using multiple references. Given initial

Index: ragout/setup.py

===================================================================

--- ragout.orig/setup.py

+++ ragout/setup.py

@@ -39,6 +39,6 @@ setup(name='ragout',

                 'ragout/phylogeny', 'ragout/scaffolder', 'ragout/shared',

                 'ragout/synteny_backend', 'ragout/newick'],

       package_data={'ragout': ['LICENSE']},

-      scripts = ['bin/ragout-maf2synteny', 'bin/ragout-overlap', 'bin/ragout'],

+      #scripts = ['bin/ragout-maf2synteny', 'bin/ragout-overlap', 'bin/ragout'],

       cmdclass={'build': MakeBuild}

       )

2to3.patch

adjustSetupParsingBinaries.patch