debian/changelog

+rambo-k (1.21+dfsg-3) unstable; urgency=medium
+
+  [ Steve Langasek ]
+  * Use Python3
+    Closes: #934882
+
+  [ Andreas Tille ]
+  * debhelper-compat 12
+  * Standards-Version: 4.4.0
+  * Secure URI in copyright format
+
+ -- Andreas Tille <tille@debian.org>  Sat, 17 Aug 2019 07:05:46 +0200
+
 rambo-k (1.21+dfsg-2) unstable; urgency=medium
 
   * debhelper 11

debian/compat

-11

debian/control

@@ -3,14 +3,14 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                javahelper,
                default-jdk,
                dh-python,
-               python-all,
+               python3-all,
                libcommons-cli-java,
                liblog4j1.2-java
-Standards-Version: 4.1.5
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/rambo-k
 Vcs-Git: https://salsa.debian.org/med-team/rambo-k.git
 Homepage: http://rambok.sourceforge.net/
@@ -18,9 +18,9 @@ Homepage: http://rambok.sourceforge.net/
 Package: rambo-k
 Architecture: all
 Depends: ${java:Depends},
-         ${python:Depends},
+         ${python3:Depends},
          ${misc:Depends},
-         python-sklearn
+         python3-sklearn
 Description: Read Assignment Method Based On K-mers
  RAMBO-K is a tool for rapid and sensitive removal of background sequences
  from Next Generation Sequencing data.

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: RAMBO-K
 Upstream-Contact: Simon Tausch <TauschS@rki.de>
 Source: http://sourceforge.net/projects/rambok/files/

debian/patches/python3.patch

+Date: Fri, 16 Aug 2019 00:53:48 -0700
+From: Steve Langasek <steve.langasek@canonical.com>
+Bug-Debian: https://bugs.debian.org/934882
+Description: Fix interpreter line
+
+Index: rambo-k-1.21+dfsg/RAMBOK.py
+===================================================================
+--- rambo-k-1.21+dfsg.orig/RAMBOK.py
++++ rambo-k-1.21+dfsg/RAMBOK.py
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env python
++#!/usr/bin/env python3
+ import os
+ import argparse
+ import simulate_reads

debian/patches/series

+python3.patch

debian/rules

@@ -5,7 +5,7 @@
 include /usr/share/dpkg/default.mk
 
 %:
-	dh $@ --with javahelper --with python2
+	dh $@ --with javahelper --with python3
 
 override_dh_auto_build:
 	CLASSPATH=/usr/share/java/commons-cli.jar:ReadTrainer_eclipse/src/org/rki/readtrainer/:ReadClassifier_eclipse/src/ jh_build classifier.jar ReadClassifier_eclipse