Commit b2a5edcb authored by Andreas Tille's avatar Andreas Tille
Browse files

Add rapmap-dev package to simplify building salmon and avoid code duplication... 

Add rapmap-dev package to simplify building salmon and avoid code duplication in salmon package source
parent 50f6aca9

debian/changelog

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@@ -9,6 +9,8 @@ rapmap (0.12.0+dfsg-1) UNRELEASED; urgency=medium 
  * Do not exclude spdlog any more as long as it is not ported to

    version spdlog 1.2.x

    Closes: #909766

  * Add rapmap-dev package to simplify building salmon and avoid code

    duplication in salmon package source



 -- Andreas Tille <tille@debian.org>  Wed, 12 Dec 2018 20:47:27 +0100

debian/control

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@@ -66,3 +66,23 @@ Description: example data for rapmap - rapid sensitive and accurate DNA read map 
 other tools.

 .

 This package contains example data to test this program.



Package: rapmap-dev

Architecture: all

Depends: ${misc:Depends}

Description: rapmap - rapid sensitive and accurate DNA read mapping (some headers)

 RapMap is a testing ground for ideas in quasi-mapping / (lightweight /

 pseudo) transcriptome alignment. That means that, at this point, it is

 somewhat experimental. The develop branch will have the latest

 improvements and additions, but is not guaranteed to be stable between

 commits. Breaking changes to the master branch will be accompanied by a

 tag to the version before the breaking change. Currently, RapMap is a

 stand-alone quasi-mapper that can be used with other tools. It is also

 being used as part of Sailfish and Salmon. Eventually, the hope is to

 create and stabilize an API so that it can be used as a library from

 other tools.

 .

 This package contains some headers and C++ source files which are

 included by package salmon and are provided here in an accessible

 way to avoid code duplication.  Usually there is no reason to install

 this package except to build the salmon package.

debian/rapmap-dev.install

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src/bit_array.c 		usr/share/rapmap/src

src/HitManager.cpp      	usr/share/rapmap/src

src/rank9b.cpp  		usr/share/rapmap/src

src/RapMapFileSystem.cpp        usr/share/rapmap/src

src/RapMapSAIndex.cpp   	usr/share/rapmap/src

src/RapMapSAIndexer.cpp 	usr/share/rapmap/src

src/RapMapUtils.cpp     	usr/share/rapmap/src



include/macros.h        	usr/include/rapmap

include/rank9b.h        	usr/include/rapmap

include/Kmer.hpp		usr/include/rapmap

include/RapMapFileSystem.hpp    usr/include/rapmap