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debian/changelog
View file @ f50b9d72
rapmap (0.12.0+dfsg-1) UNRELEASED; urgency=medium
rapmap (0.12.0+dfsg-1) unstable; urgency=medium
* New upstream version
* Point Vcs fields to salsa.debian.org
......@@ -11,8 +11,10 @@ rapmap (0.12.0+dfsg-1) UNRELEASED; urgency=medium
Closes: #909766
* Add rapmap-dev package to simplify building salmon and avoid code
duplication in salmon package source
* Lintian override for script-with-language-extension
* Avoid privacy breach
-- Andreas Tille <tille@debian.org> Wed, 12 Dec 2018 20:47:27 +0100
-- Andreas Tille <tille@debian.org> Wed, 12 Dec 2018 23:05:04 +0100
rapmap (0.5.0+dfsg-3) unstable; urgency=medium
......
debian/imgs/Join_Chat.svg 0 → 100644
View file @ f50b9d72
<svg xmlns="http://www.w3.org/2000/svg" width="99" height="20"><linearGradient id="b" x2="0" y2="100%"><stop offset="0" stop-color="#bbb" stop-opacity=".1"/><stop offset="1" stop-opacity=".1"/></linearGradient><mask id="a"><rect width="99" height="20" rx="3" fill="#fff"/></mask><g mask="url(#a)"><path fill="#555" d="M0 0h40v20H0z"/><path fill="#46BC99" d="M40 0h59v20H40z"/><path fill="url(#b)" d="M0 0h99v20H0z"/></g><g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11"><text x="20" y="15" fill="#010101" fill-opacity=".3">gitter</text><text x="20" y="14">gitter</text><text x="68.5" y="15" fill="#010101" fill-opacity=".3">join chat</text><text x="68.5" y="14">join chat</text></g></svg>
\ No newline at end of file
debian/patches/avoid_privacy_breach.patch 0 → 100644
View file @ f50b9d72
Description: Avoid privacy breach by pointing to pre-fetched copy of the image in question
Author: Andreas Tille <tille@debian.org>
Last-Update: Wed, 12 Dec 2018 20:47:27 +0100
--- a/README.md
+++ b/README.md
@@ -1,4 +1,4 @@
-[![Join the chat at https://gitter.im/COMBINE-lab/RapMap](https://badges.gitter.im/Join%20Chat.svg)](https://gitter.im/COMBINE-lab/RapMap?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)
+[![Join the chat at https://gitter.im/COMBINE-lab/RapMap](imgs/Join_Chat.svg)](https://gitter.im/COMBINE-lab/RapMap?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)
# What is RapMap?
debian/patches/series
View file @ f50b9d72
use-debian-libs.patch
use_shared_libs.patch
avoid_privacy_breach.patch
debian/rapmap-dev.install
View file @ f50b9d72
......@@ -6,7 +6,16 @@ src/RapMapSAIndex.cpp usr/share/rapmap/src
src/RapMapSAIndexer.cpp usr/share/rapmap/src
src/RapMapUtils.cpp usr/share/rapmap/src
include/kseq.h usr/include/rapmap
include/macros.h usr/include/rapmap
include/rank9b.h usr/include/rapmap
include/chobo/small_vector.hpp usr/include/chobo
include/sparsepp/spp.h usr/include/rapmap/sparsepp
include/sparsepp/spp_config.h usr/include/rapmap/sparsepp
include/sparsepp/spp_stdint.h usr/include/rapmap/sparsepp
include/sparsepp/spp_traits.h usr/include/rapmap/sparsepp
include/sparsepp/spp_utils.h usr/include/rapmap/sparsepp
include/Kmer.hpp usr/include/rapmap
include/RapMapFileSystem.hpp usr/include/rapmap
include/RapMapUtils.hpp usr/include/rapmap
include/SparseHashSerializer.hpp usr/include/rapmap
debian/rapmap.lintian-overrides 0 → 100644
View file @ f50b9d72
# see https://lists.debian.org/debian-med/2018/06/msg00043.html
rapmap: script-with-language-extension usr/bin/RunRapMap.sh