debian/TODO

+Replace code copy of spdlog by Debian packaged version once either
+upstream might have switched (see
+  https://github.com/COMBINE-lab/RapMap/issues/44
+) or we can develop a patch to adapt RapMap code to Debian spdlog.

debian/changelog

+rapmap (0.12.0+dfsg-2) UNRELEASED; urgency=medium
+
+  * Add further header files to rapmap-dev since these are used in salmon
+
+ -- Andreas Tille <tille@debian.org>  Wed, 12 Dec 2018 23:15:17 +0100
+
 rapmap (0.12.0+dfsg-1) unstable; urgency=medium
 
   * New upstream version

debian/rapmap-dev.install

@@ -6,16 +6,23 @@ src/RapMapSAIndex.cpp   		usr/share/rapmap/src
 src/RapMapSAIndexer.cpp 		usr/share/rapmap/src
 src/RapMapUtils.cpp     		usr/share/rapmap/src
 
+include/bit_*.h				usr/include/rapmap
 include/kseq.h				usr/include/rapmap
 include/macros.h			usr/include/rapmap
 include/rank9b.h        		usr/include/rapmap
-include/chobo/small_vector.hpp		usr/include/chobo
+include/chobo/small_vector.hpp		usr/include/rapmap/chobo
 include/sparsepp/spp.h			usr/include/rapmap/sparsepp
 include/sparsepp/spp_config.h		usr/include/rapmap/sparsepp
 include/sparsepp/spp_stdint.h		usr/include/rapmap/sparsepp
 include/sparsepp/spp_traits.h		usr/include/rapmap/sparsepp
 include/sparsepp/spp_utils.h		usr/include/rapmap/sparsepp
+include/Boo*.hpp			usr/include/rapmap
+include/FrugalBooMap.hpp		usr/include/rapmap
+include/IndexHeader.hpp			usr/include/rapmap
 include/Kmer.hpp			usr/include/rapmap
+include/RapMapConfig.hpp		usr/include/rapmap
 include/RapMapFileSystem.hpp		usr/include/rapmap
+include/RapMapSAIndex.hpp		usr/include/rapmap
 include/RapMapUtils.hpp			usr/include/rapmap
 include/SparseHashSerializer.hpp	usr/include/rapmap
+include/SpinLock.hpp			usr/include/rapmap