debian/changelog

+reapr (1.0.18+dfsg-5) unstable; urgency=medium
+
+  * Team upload.
+  * debhelper-compat 12
+  * Secure URI in copyright format
+  * Use secure URI in Homepage field.
+  * Move source package lintian overrides to debian/source.
+  * Update renamed lintian tag names in lintian overrides.
+  * debian/rules: fix incorrect-path-for-interpreter
+
+ -- Michael R. Crusoe <michael.crusoe@gmail.com>  Thu, 26 Dec 2019 16:22:02 +0100
+
 reapr (1.0.18+dfsg-4) unstable; urgency=medium
 
   * Team upload.

debian/compat

-11

debian/control

@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Sascha Steinbiss <satta@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
                libbamtools-dev,
                libtabixpp-dev,
                libhts-dev (>= 1.3),
@@ -16,10 +16,10 @@ Build-Depends: debhelper (>= 11~),
                snpomatic,
                tabix,
                libfile-copy-link-perl
-Standards-Version: 4.1.5
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/reapr
 Vcs-Git: https://salsa.debian.org/med-team/reapr.git
-Homepage: http://www.sanger.ac.uk/science/tools/reapr
+Homepage: https://www.sanger.ac.uk/science/tools/reapr
 
 Package: reapr
 Architecture: any

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: REAPR
 Upstream-Contact: Martin Hunt <mh12@sanger.ac.uk>
 Source: http://www.sanger.ac.uk/science/tools/reapr

debian/rules

@@ -17,6 +17,11 @@ override_dh_auto_install:
 	find src -executable -exec install {} debian/reapr/usr/lib/reapr \;
 	dh_auto_install --
 
+override_dh_install:
+	for pl in `grep -Rl '#!/usr/bin/env' debian/*/usr/*` ; do \
+	    sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
+	done
+
 override_dh_installman:
 	mkdir -p $(mandir)
 	asciidoctor -a docdate='' -b manpage $(debfolder)/man_src/*.adoc

debian/source.lintian-overrides → debian/source/lintian-overrides

 # Upstream does not provide signed tarballs
-reapr source: debian-watch-may-check-gpg-signature
+reapr source: debian-watch-does-not-check-gpg-signature