debian/changelog

+repeatmasker-recon (1.08-4) unstable; urgency=medium
+
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.1.5
+  * Fix spelling in description
+  * Do not parse d/changelog
+  * hardening=+all
+
+ -- Andreas Tille <tille@debian.org>  Tue, 10 Jul 2018 11:49:40 +0200
+
 repeatmasker-recon (1.08-3) unstable; urgency=medium
 
   * Add myself to Uploaders

debian/compat

-9
+11

debian/control

@@ -4,11 +4,11 @@ Uploaders: Olivier Sallou <osallou@debian.org>,
            Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 9),
+Build-Depends: debhelper (>= 11~),
                help2man
-Standards-Version: 3.9.7
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/repeatmasker-recon.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/repeatmasker-recon.git
+Standards-Version: 4.1.5
+Vcs-Browser: https://salsa.debian.org/med-team/repeatmasker-recon
+Vcs-Git: https://salsa.debian.org/med-team/repeatmasker-recon.git
 Homepage: http://www.repeatmasker.org/
 
 Package: repeatmasker-recon
@@ -17,7 +17,7 @@ Depends: ${shlibs:Depends},
          ${misc:Depends},
          ${perl:Depends}
 Description: finds repeat families from biological sequences
- The RECON package implements a de novo algorithm for the indentification
+ The RECON package implements a de novo algorithm for the identification
  of repeat families from biological sequences.
  .
  The program implements an approach for the de novo identification and

debian/mans/repeatmasker-recon.1

@@ -6,7 +6,7 @@ repeatmasker-recon \- finds repeat families from biological sequences
 .B repeatmasker-recon
 seq_name_list_file MSP_file integer
 .SH DESCRIPTION
-The RECON package implements a de novo algorithm for the indentification
+The RECON package implements a de novo algorithm for the identification
 of repeat families from biological sequences.
 .P
 The program implements an approach for the de novo identification and

debian/patches/0001-udpate-paths.patch

 From: Olivier Sallou <osallou@debian.org>
 Date: Fri, 21 Aug 2015 21:02:20 +0000
-Subject: udpate paths
+Subject: update paths
 
 ---
  scripts/recon.pl | 2 +-

debian/patches/0003-hardening.patch

+Author: Andreas Tille <tille@debian.org>
+Last-Update: Tue, 10 Jul 2018 11:27:19 +0200
+Description: Hack to propagate hardening options
+
+--- a/src/Makefile
++++ b/src/Makefile
+@@ -48,7 +48,7 @@ COMPRESS = gzip               # GNU comp
+ ## should not need to modify below this line
+ #######
+ SHELL  = /bin/sh
+-LIBS   = -lsquid -lm
++LIBS   = -lsquid -lm $(LDFLAGS)
+ #LIBS = -ldbmalloc -lsquid -lm 
+ 
+ READMES = README 

debian/patches/series

 0001-udpate-paths.patch
 0002-fix_binary_name.patch
+0003-hardening.patch

debian/rules

@@ -7,8 +7,7 @@
 DPKG_EXPORT_BUILDFLAGS = 1
 include /usr/share/dpkg/default.mk
 
-# see FEATURE AREAS in dpkg-buildflags(1)
-#export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 
 # see ENVIRONMENT in dpkg-buildflags(1)
 # package maintainers to append CFLAGS
@@ -16,10 +15,6 @@ include /usr/share/dpkg/default.mk
 # package maintainers to append LDFLAGS
 #export DEB_LDFLAGS_MAINT_APPEND = -Wl,--as-needed
 
-DEB_UPSTREAM_VERSION ?= $(shell dpkg-parsechangelog \
-                          | sed -rne 's/^Version: ([0-9.]+)[-+].*$$/\1/p')
-
-
 # main packaging script based on dh7 syntax
 %:
 	dh $@