Loading README.md +5 −1 Original line number Diff line number Diff line Loading @@ -66,7 +66,7 @@ You can run resfinder command line using python3 # Example of running resfinder python3 resfinder.py -i test.fsa -o . -p /path/to/resfinder_db \ -b /path/to/blastn -d aminoglycoside -k 90.00 -l 0.60 -b /path/to/blastn -d aminoglycoside -t 0.90 -l 0.60 # The program can be invoked with the -h option Usage: resfinder.py [-h] [-i INPUTFILE] [-1 FASTQ1] [-2 FASTQ2] [-o OUT_PATH] Loading Loading @@ -103,6 +103,10 @@ optional arguments: -t THRESHOLD, --threshold THRESHOLD Blast threshold for identity default minimum 0.9 -matrix, --matrix If used, gives the counts all all called bases at each position in each mapped template. Columns are: reference base, A count, C count, G count, T count, N count, - count. ``` ### Web-server Loading resfinder.py +454 −336 File changed.Preview size limit exceeded, changes collapsed. Show changes Loading
README.md +5 −1 Original line number Diff line number Diff line Loading @@ -66,7 +66,7 @@ You can run resfinder command line using python3 # Example of running resfinder python3 resfinder.py -i test.fsa -o . -p /path/to/resfinder_db \ -b /path/to/blastn -d aminoglycoside -k 90.00 -l 0.60 -b /path/to/blastn -d aminoglycoside -t 0.90 -l 0.60 # The program can be invoked with the -h option Usage: resfinder.py [-h] [-i INPUTFILE] [-1 FASTQ1] [-2 FASTQ2] [-o OUT_PATH] Loading Loading @@ -103,6 +103,10 @@ optional arguments: -t THRESHOLD, --threshold THRESHOLD Blast threshold for identity default minimum 0.9 -matrix, --matrix If used, gives the counts all all called bases at each position in each mapped template. Columns are: reference base, A count, C count, G count, T count, N count, - count. ``` ### Web-server Loading
