Commit 5c5a8b4a authored Jun 08, 2019 by Sascha Steinbiss

support Bioperl >= 1.7.4

parent bf0d8809

debian/changelog

+6 −0

Original line number	Diff line number	Diff line
		roary (3.12.0+dfsg-3) unstable; urgency=medium

		* Fix support for BioPerl 1.7.4 package currently in unstable.

		-- Sascha Steinbiss <satta@debian.org> Sat, 08 Jun 2019 11:52:37 +0200

		roary (3.12.0+dfsg-2) unstable; urgency=medium

		* Team upload.

debian/control

+2 −2

Original line number	Diff line number	Diff line
		@@ -6,7 +6,7 @@ Priority: optional
		Build-Depends: debhelper (>= 11~),
		dh-dist-zilla,
		libdist-zilla-plugin-podweaver-perl,
		bioperl,
		bioperl (>= 1.7.4),
		libarray-utils-perl,
		libenv-path-perl,
		libexception-class-perl,
		@@ -44,7 +44,7 @@ Package: roary
		Architecture: all
		Depends: ${perl:Depends},
		${misc:Depends},
		bioperl,
		bioperl (>= 1.7.4),
		libarray-utils-perl,
		libdigest-md5-file-perl,
		libenv-path-perl,

debian/patches/new-bioperl-require.patch

0 → 100644

+14 −0

Original line number	Diff line number	Diff line
		Description: use new-style BioPerl include
		Author: Sascha Steinbiss <satta@debian.org>
		Last-Update: 2019-06-08
		--- a/lib/Bio/Roary.pm
		+++ b/lib/Bio/Roary.pm
		@@ -10,7 +10,7 @@

		use Moose;
		use File::Copy;
		-use Bio::Perl;
		+use BioPerl;
		use Bio::Roary::ParallelAllAgainstAllBlast;
		use Bio::Roary::CombinedProteome;
		use Bio::Roary::External::Cdhit;

debian/patches/series

+1 −0

Original line number	Diff line number	Diff line
		rename_R_script.patch
		use-dz-starter.patch
		use-debian-perl-path.patch
		new-bioperl-require.patch