debian/changelog

@@ -2,4 +2,4 @@ rockhopper (2.0.3+dfsg-1) UNRELEASED; urgency=medium
 
   * Initial release (Closes: #<bug>)
 
- -- Andreas Tille <tille@debian.org>  Mon, 21 Aug 2017 13:12:44 +0200
+ -- Andreas Tille <tille@debian.org>  Sun, 20 May 2018 07:16:21 +0200

debian/compat

-10
+11

debian/control

@@ -3,17 +3,20 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10)
-Standards-Version: 4.1.3
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/rockhopper.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/rockhopper.git
+Build-Depends: debhelper (>= 11~),
+               javahelper,
+               default-jdk
+Standards-Version: 4.1.4
+Vcs-Browser: https://salsa.debian.org/med-team/rockhopper
+Vcs-Git: https://salsa.debian.org/med-team/rockhopper.git
 Homepage: http://cs.wellesley.edu/~btjaden/Rockhopper/
 
 Package: rockhopper
 Architecture: any
 Depends: ${shlibs:Depends},
          ${misc:Depends},
-         libhtsjdk-java
+         libhtsjdk-java,
+         libjson-simple-java
 Description: system for analyzing bacterial RNA-seq data
  Rockhopper is a comprehensive and user-friendly system for
  computational analysis of bacterial RNA-seq data. As input, Rockhopper

debian/copyright

@@ -3,6 +3,7 @@ Upstream-Name: Rockhopper
 Source: http://cs.wellesley.edu/~btjaden/Rockhopper/download.html
 Files-Excluded: net/
                 org/broad/tribble
+                org/json
 
 Files: *
 Copyright: 2013 Brian Tjaden

debian/rules

@@ -6,4 +6,4 @@ export LC_ALL=C.UTF-8
 include /usr/share/dpkg/default.mk
 
 %:
-	dh $@
+	dh $@ --with javahelper