debian/changelog

@@ -4,8 +4,10 @@ samtools (1.9-4) UNRELEASED; urgency=medium
   * Mark samtools-test as Multi-Arch: foreign.
 
   [ Andreas Tille ]
-  * Update debian/README.Debian
+  * Update debian/README.Debian, install upstream NEWS as upstream changelog
     Closes: #922861
+  * Drop reduntant information in debian/reference.  It is maintained in
+    debian/upstream/metadata now.
 
  -- Michael R. Crusoe <michael.crusoe@gmail.com>  Thu, 03 Jan 2019 01:44:10 -0800
 

debian/gbp.conf

-# This package uses pristine-tar, and does not follow the canonical layout of git-buildpackage.
-
 [dch]
 # include 7 digits of the commit id in the changelog enty:
 id-length = 7

debian/reference

-@article{HengLi06082009,
-author = {Li, Heng and Handsaker, Bob and Wysoker, Alec and Fennell, Tim and Ruan, Jue and Homer, Nils and Marth, Gabor and Abecasis, Goncalo and Durbin, Richard and 1000 Genome Project Data Processing Subgroup,  },
-title = {{The Sequence Alignment/Map (SAM) Format and SAMtools}},
-journal = {Bioinformatics},
-volume = {},
-number = {},
-pages = {btp352},
-doi = {10.1093/bioinformatics/btp352},
-year = {2009},
-URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btp352v1},
-eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/btp352v1.pdf}
-}

debian/rules

@@ -45,3 +45,6 @@ override_dh_install:
 	for pscript in `grep -Rl '#!/usr/bin/env \+perl' debian/*` ; do \
 	    sed -i '1s?#!/usr/bin/env \+perl?#!/usr/bin/perl?' $${pscript} ; \
 	done
+
+override_dh_installchangelogs:
+	dh_installchangelogs NEWS

debian/samtools.docs

 AUTHORS
-debian/reference