Loading debian/changelog +8 −0 Original line number Diff line number Diff line Loading @@ -3,4 +3,12 @@ sap (1.1.3-1) UNRELEASED; urgency=low * Initial release * Moved packaging from SVN to Git [ Steffen Moeller with a status report ] * Copyright information is not clearly stated in source code * 2nd test fails, introducing "nan" where there should be coordinates in PDF file * There are not too many free tools for structure comparisons and let alone for historical reasons SAP would be nice not to be missed. -- Andreas Tille <tille@debian.org> Mon, 28 May 2012 17:14:53 +0200 debian/control +4 −4 Original line number Diff line number Diff line Source: sap Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Uploaders: Andreas Tille <tille@debian.org> Uploaders: Andreas Tille <tille@debian.org>, Steffen Moeller <moeller@debian.org> Section: science Priority: optional Build-Depends: debhelper (>= 10) Standards-Version: 4.1.2 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/sap.git Vcs-Git: https://anonscm.debian.org/git/debian-med/sap.git Standards-Version: 4.1.3 Vcs-Browser: https://salsa.debian.org/med-team/sap Vcs-Git: https://salsa.debian.org/med-team/sap.git Homepage: https://web.archive.org/web/20160305092412/http://mathbio.nimr.mrc.ac.uk/wiki/Software#SAP Package: sap Loading debian/copyright +27 −3 Original line number Diff line number Diff line Loading @@ -2,9 +2,33 @@ Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: http://mathbio.nimr.mrc.ac.uk/download/SAP/sap-1.1.1.tar.gz Files: * Copyright: © 2008-2010 Willie Taylor <wtaylor@nimr.mrc.ac.uk> License: GPL-v3 Copyright: 1999-2010 Willie R. Taylor <wtaylor@nimr.mrc.ac.uk> (program author) 2007 Alessandro Pandini : SAP web server 2007 Jens Kleinjung : code release 2008 Siv Hollup : code update to ANSI C standard License: GPL-3.0+ Files: src/* Copyright: 5. Aug. 1994. Andris Aszodi License: GPL-3.0+ Files: debian/* Copyright: © 2012 Andreas Tille <tille@debian.org> License: GPL-v3 License: GPL-3.0+ License: GPL-3.0+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see <https://www.gnu.org/licenses/>. . On Debian systems, the complete text of the GNU General Public License version 3 can be found in "/usr/share/common-licenses/GPL-3". debian/rules +5 −0 Original line number Diff line number Diff line Loading @@ -8,3 +8,8 @@ get-orig-source: mkdir -p ../tarballs uscan --verbose --force-download --destdir=../tarballs override_dh_auto_clean: if [ -r Makefile ]; then $(MAKE) clean; fi dh_clean rm -f tests/plot.rms tests/super.pdb debian/upstream/metadata +31 −2 Original line number Diff line number Diff line Loading @@ -7,6 +7,23 @@ Reference: Pages: 19-32 DOI: 10.1385/1-59259-368-2:19 URL: http://www.springerprotocols.com/Abstract/doi/10.1385/1-59259-368-2:19 PMID: 11084900 - Author: > Inge Jonassen and Ingvar Eidhammer and Svenn H.Grindhaug and William R. Taylor Title: > Searching the protein structure databank with weak sequence patterns and structural constraints. Journal: J. Mol. Biol. Year: 2000 Month: 12 Day: 8 Volume: 304 Number: 4 Pages: 599-619 DOI: 10.1006/jmbi.2000.4211 URL: https://www.sciencedirect.com/science/article/pii/S0022283600942116 PMID: 11099383 - Author: William R. Taylor Title: Protein structure comparison using iterated double dynamic programming Journal: Protein Science Loading @@ -17,7 +34,19 @@ Reference: DOI: 10.1110/ps.8.3.654 PMID: 10091668 URL: http://onlinelibrary.wiley.com/doi/10.1110/ps.8.3.654/abstract eprint: http://onlinelibrary.wiley.com/doi/10.1110/ps.8.3.654/pdf ePrint: http://onlinelibrary.wiley.com/doi/10.1110/ps.8.3.654/pdf - Author: William R. Taylor Title: Searching for the ideal forms of proteins. Year: 2000 Month: 2 Day: 1 Volume: 28 Number: 2 Pages: 264-269 PMID: 10816140 URL: http://www.biochemsoctrans.org/content/28/2/264.long ePrint: http://www.biochemsoctrans.org/content/28/2/264.full.pdf DOI: 10.1042/bst0280264 Registry: - Name: OMICtools Entry: NA Loading Loading
debian/changelog +8 −0 Original line number Diff line number Diff line Loading @@ -3,4 +3,12 @@ sap (1.1.3-1) UNRELEASED; urgency=low * Initial release * Moved packaging from SVN to Git [ Steffen Moeller with a status report ] * Copyright information is not clearly stated in source code * 2nd test fails, introducing "nan" where there should be coordinates in PDF file * There are not too many free tools for structure comparisons and let alone for historical reasons SAP would be nice not to be missed. -- Andreas Tille <tille@debian.org> Mon, 28 May 2012 17:14:53 +0200
debian/control +4 −4 Original line number Diff line number Diff line Source: sap Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Uploaders: Andreas Tille <tille@debian.org> Uploaders: Andreas Tille <tille@debian.org>, Steffen Moeller <moeller@debian.org> Section: science Priority: optional Build-Depends: debhelper (>= 10) Standards-Version: 4.1.2 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/sap.git Vcs-Git: https://anonscm.debian.org/git/debian-med/sap.git Standards-Version: 4.1.3 Vcs-Browser: https://salsa.debian.org/med-team/sap Vcs-Git: https://salsa.debian.org/med-team/sap.git Homepage: https://web.archive.org/web/20160305092412/http://mathbio.nimr.mrc.ac.uk/wiki/Software#SAP Package: sap Loading
debian/copyright +27 −3 Original line number Diff line number Diff line Loading @@ -2,9 +2,33 @@ Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: http://mathbio.nimr.mrc.ac.uk/download/SAP/sap-1.1.1.tar.gz Files: * Copyright: © 2008-2010 Willie Taylor <wtaylor@nimr.mrc.ac.uk> License: GPL-v3 Copyright: 1999-2010 Willie R. Taylor <wtaylor@nimr.mrc.ac.uk> (program author) 2007 Alessandro Pandini : SAP web server 2007 Jens Kleinjung : code release 2008 Siv Hollup : code update to ANSI C standard License: GPL-3.0+ Files: src/* Copyright: 5. Aug. 1994. Andris Aszodi License: GPL-3.0+ Files: debian/* Copyright: © 2012 Andreas Tille <tille@debian.org> License: GPL-v3 License: GPL-3.0+ License: GPL-3.0+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see <https://www.gnu.org/licenses/>. . On Debian systems, the complete text of the GNU General Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
debian/rules +5 −0 Original line number Diff line number Diff line Loading @@ -8,3 +8,8 @@ get-orig-source: mkdir -p ../tarballs uscan --verbose --force-download --destdir=../tarballs override_dh_auto_clean: if [ -r Makefile ]; then $(MAKE) clean; fi dh_clean rm -f tests/plot.rms tests/super.pdb
debian/upstream/metadata +31 −2 Original line number Diff line number Diff line Loading @@ -7,6 +7,23 @@ Reference: Pages: 19-32 DOI: 10.1385/1-59259-368-2:19 URL: http://www.springerprotocols.com/Abstract/doi/10.1385/1-59259-368-2:19 PMID: 11084900 - Author: > Inge Jonassen and Ingvar Eidhammer and Svenn H.Grindhaug and William R. Taylor Title: > Searching the protein structure databank with weak sequence patterns and structural constraints. Journal: J. Mol. Biol. Year: 2000 Month: 12 Day: 8 Volume: 304 Number: 4 Pages: 599-619 DOI: 10.1006/jmbi.2000.4211 URL: https://www.sciencedirect.com/science/article/pii/S0022283600942116 PMID: 11099383 - Author: William R. Taylor Title: Protein structure comparison using iterated double dynamic programming Journal: Protein Science Loading @@ -17,7 +34,19 @@ Reference: DOI: 10.1110/ps.8.3.654 PMID: 10091668 URL: http://onlinelibrary.wiley.com/doi/10.1110/ps.8.3.654/abstract eprint: http://onlinelibrary.wiley.com/doi/10.1110/ps.8.3.654/pdf ePrint: http://onlinelibrary.wiley.com/doi/10.1110/ps.8.3.654/pdf - Author: William R. Taylor Title: Searching for the ideal forms of proteins. Year: 2000 Month: 2 Day: 1 Volume: 28 Number: 2 Pages: 264-269 PMID: 10816140 URL: http://www.biochemsoctrans.org/content/28/2/264.long ePrint: http://www.biochemsoctrans.org/content/28/2/264.full.pdf DOI: 10.1042/bst0280264 Registry: - Name: OMICtools Entry: NA Loading
