debian/changelog

+scoary (1.6.16-2) UNRELEASED; urgency=medium
+
+  * Use 2to3 to port to Python3
+    Closes: #938447
+  * debhelper-compat 12
+  * Standards-Version: 4.4.0
+
+ -- Andreas Tille <tille@debian.org>  Fri, 13 Sep 2019 16:13:39 +0200
+
 scoary (1.6.16-1) unstable; urgency=medium
 
   * Initial release (Closes: #920857)

debian/compat

-9

debian/control

@@ -3,14 +3,13 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>=9),
+Build-Depends: debhelper-compat (= 12),
                dh-python,
-               python-all,
-               python-setuptools,
-               python-scipy (>= 0.16),
-# Test-Depends:
-               python-nose
-Standards-Version: 4.3.0
+               python3-all,
+               python3-setuptools,
+               python3-scipy (>= 0.16),
+               python3-nose <!nocheck>
+Standards-Version: 4.4.0
 Vcs-Browser: https://salsa.debian.org/med-team/scoary
 Vcs-Git: https://salsa.debian.org/med-team/scoary.git
 Homepage: https://github.com/AdmiralenOla/Scoary
@@ -18,8 +17,9 @@ Homepage: https://github.com/AdmiralenOla/Scoary
 Package: scoary
 Architecture: all
 Depends: ${misc:Depends},
-         ${python:Depends},
-         python-pkg-resources
+         ${python3:Depends},
+         python3-pkg-resources,
+         python3-scipy
 Suggests: roary
 Description: pangenome-wide association studies
  Scoary is designed to take the gene_presence_absence.csv file from

debian/patches/series

+2to3.patch

debian/rules

@@ -4,7 +4,7 @@
 export LC_ALL = C.UTF-8
 
 %:
-	dh $@ --with python2 --buildsystem=pybuild
+	dh $@ --with python3 --buildsystem=pybuild
 
 override_dh_auto_test:
 ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))